PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON84220.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 534aa    MW: 60001.3 Da    PI: 6.7971
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON84220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-16235281148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed  l ++v ++G + W++Ia+++  gR +kqc++rw+++l
       PON84220.1 235 KGQWTPQEDRMLMQLVGRYGIRKWSKIAKMLS-GRVGKQCRERWHNHL 281
                      799*****************************.*************97 PP
2Myb_DNA-binding54.52.8e-17287329145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W+++Ed +l++a+k+lG++ W+ Iar+++ gR+++ +k++w+
       PON84220.1 287 KETWSEDEDIILIEAHKELGNR-WAEIARRLP-GRSENTIKNHWN 329
                      578*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    
MRENNFPLLS SLFPENPLNK NGLPSLELSS SKALFQSNPY HFDHRDHNHH QLPLNGSNIL  60
NSQSGFGHFT SDQTGSSSSN PFLGVSAPCI DSFVPYTNGF SKDLSAFNSS VPFPSQSQSG  120
VMHGLIQSGT KPFWGNQNLI SAQPAVPETY DLYPSSTAAT LNFRDVGSAK NLPDDHISCI  180
STDDKKVCQK KSSSSSSVGQ KKRRRLHMVR KAGKRRRLHM VRKAGKVQKK SNVIKGQWTP  240
QEDRMLMQLV GRYGIRKWSK IAKMLSGRVG KQCRERWHNH LRPDIRKETW SEDEDIILIE  300
AHKELGNRWA EIARRLPGRS ENTIKNHWNA TKRRQSSKKN RDSINNLPGS LLQNYIRSLM  360
MNEQNSNNSS SSTAENDNIE DNIKTEDRDD DDDDDQLIAG GADNPDDHDE EDQSNAAAAL  420
RVATSADQLS SDLSTCADNN NWANTNNSNN NSEEDYYNVD MSAMEVNAVN DRNLYSQGYG  480
FRSLLEEMSY GSSVINDENG VDFQMRSEIE SLMRGPGEVK KEMDLMEMIC QGKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200217QKKRRRLHMVRKAGKRRR
2201217KKRRRLHMVRKAGKRRR
3201218KKRRRLHMVRKAGKRRRL
4201226KKRRRLHMVRKAGKRRRLHMVRKAGK
5202218KKRRRLHMVRKAGKRRR
6202227KKRRRLHMVRKAGKRRRLHMVRKAGK
7202206KRRRL
8202215KRRRLHMVRKAGKR
9203219KKRRRLHMVRKAGKRRR
10214218KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.14e-66MYB family protein