PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON84123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 94aa MW: 10712.2 Da PI: 9.3767 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.1 | 3.6e-16 | 11 | 50 | 7 | 45 |
HHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSv.LCdaevaviifsstgk 45 sn v+fskRr+g++ KA EL++ Cda++a++i+s+tg+ PON84123.1 11 SNIFVSFSKRRKGLFQKATELCTtFCDAQIAIVILSTTGN 50 6778******************549*************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence |
MEEQQKQAQA SNIFVSFSKR RKGLFQKATE LCTTFCDAQI AIVILSTTGN PFSFGHSSVD 60 DVLRHYLGKT TIGPPNFITD EQRHQIQRIE RLKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01530.1 | 5e-20 | M-type_MADS family protein |