PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON83552.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 489aa    MW: 55410 Da    PI: 4.4638
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON83552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS240.47.5e-741244842373
        GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  +lLl+ Aeav++++   a++++arl+ l    ++g +++  la +ft++L+++ ++     +    p ++++ ++ ++l+a+++ +e+sP++kf+h+t
  PON83552.1 124 ADLLLTGAEAVEAKNWPVASNIVARLNSLllDEKNGdNSFSSLALFFTQGLHHKSVK-----APD-MPHQQPDFKQRNTLSAFQIIQELSPYVKFAHFT 216
                 679************************99886666658****************999.....223.34444456688999******************* PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.r 195
                 aNqaIlea++g++ vH+iDfdi++G+QWp+L+  La+R++   slR+T++   +++++  +e+tg+rL++fA+++ ++f f+ +     e ++ e++ +
  PON83552.1 217 ANQAILEATQGDRDVHVIDFDIMEGIQWPPLMVDLAKRNDA--SLRVTAIIW-DQQNAVFVEQTGRRLKEFADSISLSFVFDQV-----EIVSAEDFdK 307
                 **************************************766..9******99.5578999**********************97.....4444444423 PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl..eaklpreseerikvEre 288
                 ++ g +l+ n++++ ++++++s sl +   ++L  +++lsPk++v+ve+e    ++  s sF+e f+ea+++y+++ dsl  +++ +++   r+ +E+e
  PON83552.1 308 LQAGQTLIANCMIHQFHMPSRSFSLVK---SFLVGMNKLSPKILVLVEEElfnlSKIPSMSFVEFFCEAFHHYTSFADSLvlSSSGGNKMGLRRLIEKE 403
                 477*******************99999...********************8665555788********************744554555599******* PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +lg ++ + + +   e++er+     W++ l +   Fkp+p+s+ + +qak l++ ++  g+ v++e+  l l+Wk+ pL+++S W
  PON83552.1 404 ILGMRVLDSLRQFPCEKEERML----WEDGLASlKRFKPIPMSHGNISQAKFLVSLFS-GGFWVQHEKCRLNLCWKSTPLTTASIW 484
                 **************99777766....***9988468**********************.89************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MVLQQIDHQY PSSFNLSYIE ELNQCSFEAF SSFQIDDPLF TSDVIEDGTM AGESMERLLQ  60
IEASLMEIET ISEDIDLSGL DTLMEVEFGN YLEQGAEENE PVLTEGSSPW EESQVEFRED  120
SSLADLLLTG AEAVEAKNWP VASNIVARLN SLLLDEKNGD NSFSSLALFF TQGLHHKSVK  180
APDMPHQQPD FKQRNTLSAF QIIQELSPYV KFAHFTANQA ILEATQGDRD VHVIDFDIME  240
GIQWPPLMVD LAKRNDASLR VTAIIWDQQN AVFVEQTGRR LKEFADSISL SFVFDQVEIV  300
SAEDFDKLQA GQTLIANCMI HQFHMPSRSF SLVKSFLVGM NKLSPKILVL VEEELFNLSK  360
IPSMSFVEFF CEAFHHYTSF ADSLVLSSSG GNKMGLRRLI EKEILGMRVL DSLRQFPCEK  420
EERMLWEDGL ASLKRFKPIP MSHGNISQAK FLVSLFSGGF WVQHEKCRLN LCWKSTPLTT  480
ASIWVPIRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-49GRAS family protein