PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON83497.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family Trihelix
Protein Properties Length: 504aa    MW: 57901.4 Da    PI: 6.1451
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON83497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.42.5e-3051135187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+e+r++m+ ++r+++ k+plWeevs+km + g++rs+k+Ckek+en+ k++k++++g++++++++   +++f+qlea
  PON83497.1  51 RWPRQETLALLEIRSDMDAKFRDSSIKAPLWEEVSRKMGQLGYNRSAKKCKEKFENIYKYHKRTRDGRSGKSNGKA--YRFFEQLEA 135
                 8********************************************************************9866665..*******85 PP
2trihelix104.86e-33342427187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k+ev aLi++r++++++++++  k+plWe+vs +m++ g++rs+k+Ckekwen+nk++k++k+++kkr  e+s+tcpyf+ql+a
  PON83497.1 342 RWPKDEVDALIRLRTNLDSQYQENGPKGPLWEDVSVAMKKLGYNRSAKRCKEKWENINKYFKRVKDSNKKR-VEDSKTCPYFHQLDA 427
                 8*********************************************************************8.78889********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MLENPTLPEN PSATNPGNGE VGDSVGSVPV GFGEEERLGA EDGDRSWLGN RWPRQETLAL  60
LEIRSDMDAK FRDSSIKAPL WEEVSRKMGQ LGYNRSAKKC KEKFENIYKY HKRTRDGRSG  120
KSNGKAYRFF EQLEALDHHS FDPSLPTSSE KVDISLEETK TTTRSPTNVV INAIPCSIHK  180
PTTNFVDNSP SNSSSSSQES EGVRKKKRKL TQFFEKLMKE VTDRQEKLQR KFIETLEKCE  240
QERIAREEAW KMQELERIKR ESDLLVHERS VAAAKDAAVL AFLKKFSEQA DPVQFPENSI  300
AVGETDLDRQ EKHHGGNDEQ IGLDTQEKLK NNRNFVQVSS SRWPKDEVDA LIRLRTNLDS  360
QYQENGPKGP LWEDVSVAMK KLGYNRSAKR CKEKWENINK YFKRVKDSNK KRVEDSKTCP  420
YFHQLDALYN KKTKKVDDSL NSDYDLRPEE LLMHMMGGQE EQQQPETVTE NEESENLSHD  480
QGENEKVDGD GYKHTDHSSM EIMG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-70Trihelix family protein