PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82961.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 684aa    MW: 73954.1 Da    PI: 5.1539
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.82.3e-973246833374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  +L e+Ae +++g+  laq +Larl++++sp g+p+qR+++yf+eAL+  ++    ++ ++l+ s+ +    + ++ a+k+fse+sP+l+f+++t+ qa
  PON82961.1 324 GQLSEAAELIETGNPVLAQGILARLNHHVSPLGKPFQRAVFYFKEALQVLVHM---STTNSLALSPFN---LIFKIGAYKTFSEISPVLQFANFTCTQA 416
                 5899***********************************************99...556666667766...**************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.. 194
                 Ileaveg +r+H+iDfdi+ G+QW++++q+La R+    +g ++l+iT+++sp+++++ el+ t+e+L++fA+e+++ fe +++ + ++ + + + L  
  PON82961.1 417 ILEAVEGLNRIHVIDFDIGCGGQWASFMQELALRNggsiSGGATLKITAFASPSTDDEIELSFTQENLKHFASEINLAFELEII-SLEMLNSDSWPLpl 514
                 ***********************************77666689****************************************6.55666666676622 PP

        GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                 rv++g  +aVn+ +  ++ +  +++l+     vL++vk+lsPkvvv  e+ +d+++ +F  ++++al+ ys l++sl++    + ++ +k+Er ll++e
  PON82961.1 515 RVSEGVGIAVNFPIGSFSSY--PLPLPL----VLRFVKQLSPKVVVSLERGCDRTDVPFSLQIVHALKSYSGLLESLDVV-NVNLDALQKIERCLLQPE 606
                 66666677777777766666..666666....*********************************************877.4566999*********** PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 i+++v    ++     e+   Wr+ + ++GF+p+ +s+++++qa++l+++ + +g++ve+++ slvl+W++++L+s+SaW+
  PON82961.1 607 IEKMVLGCRRS----PERTLPWRSSFLNSGFSPLMFSNFTESQAECLVQRSQARGFHVEKKQSSLVLCWQQKELISASAWK 683
                 ****9877776....78899************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    
MNKAMLPLPF EEFQAKGVLD VSSTASDSVL PPQKWNTLIT KENCYMGSEP TSVLDTRSPS  60
PPTSTSTLSS SLGSGGGGTG SVNTTTGPGL ALASASDAPS GTGSALVEEK CGLGMGDWES  120
VLSESPGQEQ SIMRLIMSEV DDPSLGLNKL LQSGSVSQEM EFGAGGFGLV DQGFGFEPII  180
GTGTACSDFQ FSAPDVQSYN ANSLLPVSPL GFHQQHHQLV EHVEAKPQVL NAINQNQALV  240
MPLTYAQLQE HYGVSPPPAK RLNTGAVGAN YQAQKVQFPN SGHEQLQLLH QQRPTTMAVP  300
KQKAMSPAMG DELGNHQLQQ ALTGQLSEAA ELIETGNPVL AQGILARLNH HVSPLGKPFQ  360
RAVFYFKEAL QVLVHMSTTN SLALSPFNLI FKIGAYKTFS EISPVLQFAN FTCTQAILEA  420
VEGLNRIHVI DFDIGCGGQW ASFMQELALR NGGSISGGAT LKITAFASPS TDDEIELSFT  480
QENLKHFASE INLAFELEII SLEMLNSDSW PLPLRVSEGV GIAVNFPIGS FSSYPLPLPL  540
VLRFVKQLSP KVVVSLERGC DRTDVPFSLQ IVHALKSYSG LLESLDVVNV NLDALQKIER  600
CLLQPEIEKM VLGCRRSPER TLPWRSSFLN SGFSPLMFSN FTESQAECLV QRSQARGFHV  660
EKKQSSLVLC WQQKELISAS AWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-163GRAS family protein