PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82371.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family TCP
Protein Properties Length: 497aa    MW: 53543.3 Da    PI: 7.9207
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.93e-37862482134
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec.... 73 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                       +++sa e     
  PON82371.1  86 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAIAELPSLnssfpdtpkqlsdekrasggtgrGFDSA-ELeldg 183
                 689*************************************************************9888888888887777777666644444.223455 PP

         TCP  74 eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                 ++++ + ++++++++ + +++a+s+ s++s+ s l+l++      r kar+rarer ++++ ++n
  PON82371.1 184 DQGNYQHQDQQQNQHLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARERAAKEKEKEN 248
                 44555555555555566666666666666666666666643336669********7777666654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    
MEAEEIQAQA CKFPRIGNGS RSDSSSKLLG QKGGNDHYPD DEEDGRELKR VGGGGGATDV  60
SLVNGGANRL RGWHHSSRII RVSRASGGKD RHSKVWTSKG LRDRRVRLSV TTAIQFYDLQ  120
DRLGYDQPSK AVEWLINAAS DAIAELPSLN SSFPDTPKQL SDEKRASGGT GRGFDSAELE  180
LDGDQGNYQH QDQQQNQHLS LSKSACSSTS ETSKGSGLSL SRSEIRVNRV KARERARERA  240
AKEKEKENES RIVHQHEQNM NISPNSTFTE LLTGGISNAN SSSNNNNNAS SPTASTQQNP  300
GPGGGAGTHM DYFASGLLGL SSSSRTHHQS SGFSGQIHLG NSLPQQTMSM SMSMPPYGVV  360
SGDHNQAEAL QHFSFVPEHY IPVATSQTNG NGGDYNLNFS ISSGLAGFNR GTLQSNSPSL  420
LPHLQRFTPI DGSNVPFFIG AAAAAAASAA PQMENHHHHH HNQNHNHQFP PGLFDGRLQL  480
CYGDGSRQSD QKGKGKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.12e-42TCP family protein