PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON82336.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family ARF
Protein Properties Length: 878aa    MW: 97272.2 Da    PI: 6.1284
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON82336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.4e-24127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PON82336.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 221
                 99*****************************8544444..48************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PON82336.1 222 LLGIRRA 228
                 ****997 PP
2Auxin_resp87.82.1e-292503151983
  Auxin_resp  19 astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 as+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  PON82336.1 250 ASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 315
                 689**************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    
MRLSSVGFSP QPQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNQE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEA YLPADLGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGISD  300
LDAVRWPNSH WRSVKVGWDE STAGDRQPRV SLWEIEPLTT FPMYPSPFPL RLKRPWPPGL  360
PTFHGIKDED LGMNSQLMWL RGDYGDRGIQ ALNFQGVGVT PWMQSRLDAS MIGLQPDMYQ  420
AMAAAALQEM RAVDPSKPIL QFQQTQNLPS RSAAASSLMQ PQMLQQPQPQ QAFLQSMQDN  480
QQSTQPQTQT SSHLLQQQLQ HQHSFNSNSS QQQQQTPPQQ QLVDHQQIPS AVSPMSHFSS  540
ASQSQSPSLQ AISSMCQQQN FPDSNGTAVT SSMVSPLHSI LGSFSPDESS HLLNMPRSNL  600
SSAVWPSKRA AVEPLISSGP SQCVLPQVEH LGPQTNISQN SVSLPPFPGR ECTIDQEGNT  660
DPQSHLLFGV NIEPSSLLMQ NGMSNLRGVG SDSDSTTIPF PSSSYMSTTG TDFSLNPAIT  720
PSSCIDESGF LQSPENGGQG NQPSRTFVKV YKSGSFGRSL DLTKFSSYNE LRIELARMFG  780
LEGELEDPLR SGWQLVFVDR ENDVLLLGDD PWQEFVNSVW CIKILSPQEV QQMGKRGLEL  840
LNSVSIQRLA NNSCDDYPSR QDSRNLSSGI TSVGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein