PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON82211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | C3H | ||||||||
Protein Properties | Length: 861aa MW: 95786.7 Da PI: 8.2855 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 1e-06 | 183 | 202 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f++ G C++G+ C+F H PON82211.1 183 LCKDFSA-GRCRRGNHCPFLH 202 9******.************* PP | |||||||
2 | zf-CCCH | 22 | 2.8e-07 | 241 | 262 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC++f + G C++G++CkF Hg PON82211.1 241 ALCNDFVK-GRCRRGASCKFEHG 262 79******.***********998 PP | |||||||
3 | zf-CCCH | 17.4 | 8.1e-06 | 305 | 325 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G C+ G C+F+H PON82211.1 305 PCKFFAA-GNCRNGKYCRFSHH 325 7**9999.*************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 861 aa Download sequence |
MSGSGRKRSS KWDLRDQPQF EDVNVQDDGW PGKTGRSVYH RESGHGWESP ELAGSNGSKW 60 SALETNDQRS KHDSTFLPRE TFSGSRGSHK NENIDKDRNR YVTDSMAWDA DEDYGTRMSP 120 GLDEWRQKNH SQSPKSGWSR SMRDRSRSRS KSRGRSRSPV HGLRRESGFL ERSRSRSGVS 180 SQLCKDFSAG RCRRGNHCPF LHEGDEAYED YWDSRQRKVG ISKYSTLDTR DYPSRSGRSS 240 ALCNDFVKGR CRRGASCKFE HGASDGFSLG SANEVSREKE TDRRRRDTST DRGVEHEARR 300 NIDIPCKFFA AGNCRNGKYC RFSHHTQTYA SPDRKLQDKW ALGRKSDDVD QVWDGPKWND 360 KINASDASKF SEDINGNIGA PETDNAEASM GLSESRRTEK WLDDMDMSPD WNYTVPSASH 420 VVKEEHTRIT QHSESFKDMS LTTCKQSVTQ EAASARINGV HAVVQPMIPE NSLFQPKRDL 480 RDDSAIALPY DDNNAVRKNV SSCTDLNNIF DQNSQRVSVY PFPGLNTIGQ SQVVIPTELQ 540 GGILKNLQNN TLLTEGISVT KPDFQDAKTS LINSGIDPSQ RMVNGEQATH LTNLSASLVQ 600 LFGNGQQLPQ LYAALNSNNS AGTPSFTGGP VTSSTILPVA ATGPQKHNDP RQNSMESKIP 660 EISNNPPSIL TSNTVKADSD TKPEIQLKNL TPLSFPGMSD VTDCQQPGGS VEEPNQQRES 720 LIQLEPNPIS KVTEEKIELN SGGSKKAPEE NSKVDESDPL DGVDKEGPND GKKNKDAKGV 780 RAFKFALVEF VKELLKPTWK DGQIGKDAYK TIVKKVVDKV TGTMQAASIP QTQEKIDHYL 840 SFSKAKLTKL VQAYVEKAQK G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 286 | REKETDRRRR |
2 | 282 | 287 | DRRRRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-12 | C3H family protein |