PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON82135.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

NF-YC

Protein Properties

Length: 295aa MW: 32445.7 Da PI: 4.9715

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON82135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.6	1.6e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r PON82135.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL RDIVSRVPDY GHSHSDAAGD DRTYSKRRKA AGDECNDSDE 120 ELKRSKMLEM THGSSSGRGR GRGRGRGRGR GARAIERETS HLETESEPCS SLQYGTRLST 180 NPGVPVDNAS DTKDISKENI GIGDETDPTA RNFDLNADVN ESANENENAK KAVAAAATAA 240 GTVQAPSAGT TSETKHEEYP GWSLPEMDQM AIDPIQLAHL STRLDEEDED YDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	147	RGRGRGRGRG
2	138	148	RGRGRGRGRGR
3	140	149	RGRGRGRGRG
4	140	150	RGRGRGRGRGR
5	142	151	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-74	NF-YC family protein