PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81627.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 346aa MW: 38905.9 Da PI: 6.4124

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	8.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l +++k +G g+W+ +++ g++R++k+c++rw++yl PON81627.1 14 RGAWTVHEDKILSEYIKNHGEGRWRNLPQKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	53	8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ PON81627.1 67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRSPCCSNE GLNRGAWTVH EDKILSEYIK NHGEGRWRNL PQKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVPLVQ 120 HLHQTTSSNT TATTSSNQSK KPKTNHSSSS PGKAPLAEMG AHVVRTKAIK CSTTAGVFLN 180 YPKPNRTDEG VADHAGGVVV PSKDHDEDKY DVASNCYDIN SVVQGSGLSA FDDHEYYVNA 240 QDTNLSQNKY FVDQMEELCL SDLLNSDYFD FPVHDHNFVD TYNYNVSTYN HPKDEIVGDH 300 HDNHDHDLLF SQGYDWISTS CSSMTVIDPN VGPDFHSNAE GDWLAD

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRSPCCSNE GLNRGAWTVH EDKILSEYIK NHGEGRWRNL PQKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVPLVQ  120
HLHQTTSSNT TATTSSNQSK KPKTNHSSSS PGKAPLAEMG AHVVRTKAIK CSTTAGVFLN  180
YPKPNRTDEG VADHAGGVVV PSKDHDEDKY DVASNCYDIN SVVQGSGLSA FDDHEYYVNA  240
QDTNLSQNKY FVDQMEELCL SDLLNSDYFD FPVHDHNFVD TYNYNVSTYN HPKDEIVGDH  300
HDNHDHDLLF SQGYDWISTS CSSMTVIDPN VGPDFHSNAE GDWLAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	3e-63	MYB family protein