PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81615.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

GRF

Protein Properties

Length: 386aa MW: 43748.3 Da PI: 7.8881

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81615.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78	9e-25	77	120	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e PON81615.1 77 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 120 79***************************************987 PP
2	QLQ	57.6	3.8e-20	8	42	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l++Ky++++ P+Pp+L++ i+ PON81615.1 8 PFTASQWQELEHQALIFKYMVSGIPIPPDLIFTIK 42 8*****************************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MSGKNRFPFT ASQWQELEHQ ALIFKYMVSG IPIPPDLIFT IKRSYMDSAV LPSKLFSHHS 60 QHVGWNCFQM GLGRKIDPEP GRCRRTDGKK WRCSKEAFPD SKYCERHMHR GKNRSRKPVE 120 VLKTTTGTNS NSNSKPNPSS VTPTLVSSIT KTLSNNSLSS LSSLPSEAQN RGHLHPSCYH 180 NPHLDHNSLD LYHHSSSCSR PPGLGLSSQD SSTSLLFYSG SYSNADLRSR YVYGLKEEVD 240 EHSFFSEEPS GTHVRDLSMD DTWQLTPLTM SCSSSSSKQR NFSDSQNEHS YLQLQSSTHG 300 YKQHNKQDQQ HCDLMGNDIK RERKEETQKT IHFFDEWPVK EKDSWLDLDD KSSNSGSVST 360 TQLSISIPTS SFDFPIFNTS NTHNGD

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MSGKNRFPFT ASQWQELEHQ ALIFKYMVSG IPIPPDLIFT IKRSYMDSAV LPSKLFSHHS  60
QHVGWNCFQM GLGRKIDPEP GRCRRTDGKK WRCSKEAFPD SKYCERHMHR GKNRSRKPVE  120
VLKTTTGTNS NSNSKPNPSS VTPTLVSSIT KTLSNNSLSS LSSLPSEAQN RGHLHPSCYH  180
NPHLDHNSLD LYHHSSSCSR PPGLGLSSQD SSTSLLFYSG SYSNADLRSR YVYGLKEEVD  240
EHSFFSEEPS GTHVRDLSMD DTWQLTPLTM SCSSSSSKQR NFSDSQNEHS YLQLQSSTHG  300
YKQHNKQDQQ HCDLMGNDIK RERKEETQKT IHFFDEWPVK EKDSWLDLDD KSSNSGSVST  360
TQLSISIPTS SFDFPIFNTS NTHNGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-55	GRF family protein