PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81333.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 1117aa MW: 123285 Da PI: 6.7841

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.6	2e-22	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l+ PON81333.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQHLL 231 99***************************9445444.38*********************************************..5689999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PON81333.1 232 LGIRRA 237 ***997 PP
2	Auxin_resp	117.6	1.1e-38	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp rW+nS+Wr+L+ PON81333.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCgNQMSLGMRFRMMFETEESGTRRYMGTITGISDLDPARWKNSQWRNLQ 345 79******************************988*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1117 aa Download sequence
MKAPTNGCGG GSAAAAPPNP CEGTEKKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE 60 QVAASMKKDV DAQIPNYTNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VHTVDKDALL 120 RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD 180 LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQHL LLGIRRANRQ 240 PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVCGNQ 300 MSLGMRFRMM FETEESGTRR YMGTITGISD LDPARWKNSQ WRNLQVGWDE STAGERRNRV 360 SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDSSDLDS LFKRTMPWLG DDMCMKDNQG 420 FPGFSLVQWM NMQQNPALAN SIQPNYMQHS FSGSVIQNLP GADLSRQLGL SAPQISQANN 480 LQFNSQRIPQ QAQQLDQLSK LPSTLNPLGS IIQPQPLSDV TQQPRQNIVN QTLSSSQVQA 540 QILQPQNIVQ TSNILQQQTS MQNNQLQRNL SQNQHHQPQI TSQSQQQNII QSQLPDQINQ 600 QLQHISDNQL RLQLLEKLQQ QQQSILAQQS SLQQPAQLTQ TQIQDQQRQL LDVSQSFSRS 660 ATSTQMLEMP QMVTSSLPQP NTITQQMTKN NINQNNGRFS QTPHQPKLQQ QQPGMLSETP 720 GHMGLPPNSV TNQVAVGGSS VMTGAVGAGQ SGITDDVPSC STSPSTNNCG SNGVQPVINS 780 RVHRSTVLAE DMAQSAATIL SPNALETISS NVYFIKDFQQ KSEVKPSLNI PRSQSQGICT 840 PHTYMNGAAA QTDYLDTSSS TTSVCLSQND VNLQQNNNQF PFNPQSMLFR EASQDREVQA 900 DQGNNVSYGN TIDGQLGVPL NPDPLLTKGL AGLGKDFPSN LSSGGILNCY ENSKDAQQEL 960 SSSMVSQSFG VPDMTFNSID STINDSSFLN RGPWAPAPQL QRMRTYTKVY KRGAVGRSID 1020 ITRYSGYDEL KQDLARRFGI EGQLEDRQRV GWKLVYKDHE NDILLVGDDP WQEFVNCVRC 1080 IKILSPQEVQ QMSLDGDFGG SGVLPNQACS SSDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1117 aa Download sequence

MKAPTNGCGG GSAAAAPPNP CEGTEKKSIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DAQIPNYTNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VHTVDKDALL  120
RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQHL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVCGNQ  300
MSLGMRFRMM FETEESGTRR YMGTITGISD LDPARWKNSQ WRNLQVGWDE STAGERRNRV  360
SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDSSDLDS LFKRTMPWLG DDMCMKDNQG  420
FPGFSLVQWM NMQQNPALAN SIQPNYMQHS FSGSVIQNLP GADLSRQLGL SAPQISQANN  480
LQFNSQRIPQ QAQQLDQLSK LPSTLNPLGS IIQPQPLSDV TQQPRQNIVN QTLSSSQVQA  540
QILQPQNIVQ TSNILQQQTS MQNNQLQRNL SQNQHHQPQI TSQSQQQNII QSQLPDQINQ  600
QLQHISDNQL RLQLLEKLQQ QQQSILAQQS SLQQPAQLTQ TQIQDQQRQL LDVSQSFSRS  660
ATSTQMLEMP QMVTSSLPQP NTITQQMTKN NINQNNGRFS QTPHQPKLQQ QQPGMLSETP  720
GHMGLPPNSV TNQVAVGGSS VMTGAVGAGQ SGITDDVPSC STSPSTNNCG SNGVQPVINS  780
RVHRSTVLAE DMAQSAATIL SPNALETISS NVYFIKDFQQ KSEVKPSLNI PRSQSQGICT  840
PHTYMNGAAA QTDYLDTSSS TTSVCLSQND VNLQQNNNQF PFNPQSMLFR EASQDREVQA  900
DQGNNVSYGN TIDGQLGVPL NPDPLLTKGL AGLGKDFPSN LSSGGILNCY ENSKDAQQEL  960
SSSMVSQSFG VPDMTFNSID STINDSSFLN RGPWAPAPQL QRMRTYTKVY KRGAVGRSID  1020
ITRYSGYDEL KQDLARRFGI EGQLEDRQRV GWKLVYKDHE NDILLVGDDP WQEFVNCVRC  1080
IKILSPQEVQ QMSLDGDFGG SGVLPNQACS SSDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein