PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81312.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 383aa MW: 42625.3 Da PI: 5.8829

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.2e-15	31	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl PON81312.1 31 KGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 78 678*******************************************97 PP
2	Myb_DNA-binding	50.5	4.9e-16	84	128	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++ lG++ W+ Ia++++ gRt++++k++w++ PON81312.1 84 RGAFSPQEEDLIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 128 89******************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MRNPADSILM GKDRLVNNNN NSNNNKSKLR KGLWSPEEDE KLMRYMLTNG QGCWSDIARN 60 AGLQRCGKSC RLRWINYLRP DLKRGAFSPQ EEDLIIHLHS ILGNRWSQIA ARLPGRTDNE 120 IKNFWNSTLK KRLKLNTSTS SSSPNDSNSS EDQPTTNHVN DIAGMTTTMM PMHNDVHDIM 180 TSTIHMDSSC SSSTSMHATT TAAGNYQFDP FCMLDYSRHD MSHADSLVNL MPTCLTQVGS 240 MGSSEAGGAL DHIISLGDYG VLEAAAGNKM GHHQYLEKDQ LFSLPQLESR SNNIEENNMA 300 SVDDIKGSSS TISYNNNNSN HFMNNSSTTT CFNMADSFKG EGILGFGNNG QYQQGVENLK 360 MGEWDLEGLM QDISSFPFLD FQV

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MRNPADSILM GKDRLVNNNN NSNNNKSKLR KGLWSPEEDE KLMRYMLTNG QGCWSDIARN  60
AGLQRCGKSC RLRWINYLRP DLKRGAFSPQ EEDLIIHLHS ILGNRWSQIA ARLPGRTDNE  120
IKNFWNSTLK KRLKLNTSTS SSSPNDSNSS EDQPTTNHVN DIAGMTTTMM PMHNDVHDIM  180
TSTIHMDSSC SSSTSMHATT TAAGNYQFDP FCMLDYSRHD MSHADSLVNL MPTCLTQVGS  240
MGSSEAGGAL DHIISLGDYG VLEAAAGNKM GHHQYLEKDQ LFSLPQLESR SNNIEENNMA  300
SVDDIKGSSS TISYNNNNSN HFMNNSSTTT CFNMADSFKG EGILGFGNNG QYQQGVENLK  360
MGEWDLEGLM QDISSFPFLD FQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08500.1	8e-64	MYB family protein