PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON80877.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 541aa    MW: 58710.5 Da    PI: 5.4851
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON80877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.46.8e-1011425341374
        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...........sseelaalklfs 85 
                 l++lL+++Aea+   + +  la+ +L rl+el+sp+g ++m+Rlaa+fteAL++ l ++ s+ ++a +   +s+++           +++++aa++l++
  PON80877.1 142 LIHLLMAAAEALGGANRSrdLARVILVRLKELVSPNGgTNMERLAAHFTEALQNLLDGTASGSAHASKHFLNSHHHhrgdehhhhhhQTDVVAAFQLLQ 240
                 689*********887766559***************999*****************997777666664444443334556778888888889999**** PP

        GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                 ++sP++kf+h+taNqaIleav++++r+Hi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++ ++g   s  +++etg+rL  fA+++g pf+f+
  PON80877.1 241 DMSPYVKFGHFTANQAILEAVAHDRRIHIVDYDIMEGIQWASLMQALVSRKDGPPapHLRITALSRGSAGgrrSIGTVQETGRRLVAFAASIGQPFSFH 339
                 ***************************************************776555*********99989999999********************** PP

        GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......sFlerflealeyysalfdsle 272
                     ++ e++++ +L++ +gEal  n++l+l ++  +s ++     ++L+  kslsP+++++ve+ea++  +       F++rf++ l+ ysa++dsle
  PON80877.1 340 QCRLDSDEAFRPAALKLVKGEALLMNCMLNLPHFSYRSPESVA---SFLSGSKSLSPRLITLVEEEASLAPAapggegAFVARFMDLLYQYSAVYDSLE 435
                 *9999*****************************977666666...9*******************8774333555569******************** PP

        GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsv 370
                 a++p +s++r+ vEr +lg++i+  +    ++   r e+ ++W e+l +aGF++ p+s+ + +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+
  PON80877.1 436 AGFPMQSRARALVERIFLGPRISGSLGRVYRA---RGEESSSWGEWLAAAGFRASPVSSANICQAKLLLGLFN-DGYRVEELaSNRLVLGWKSRRLLSA 530
                 **************************999998...888899********************************.******8769999************ PP

        GRAS 371 SaWr 374
                 S W+
  PON80877.1 531 SLWT 534
                 ***6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    
MTDLAISSTM AMAMDMDMDM IDDALDLDLS GYSTTTTTTT TTTTITTNTT SPEDDHGCAW  60
NSWSPVVDWN ALTGGHDNFH DLIESMMDDD DDDDGELNSA HKGGNSSNGW FNGNSTPPTE  120
AVGDEYSAGG DGVVDDDKGL RLIHLLMAAA EALGGANRSR DLARVILVRL KELVSPNGGT  180
NMERLAAHFT EALQNLLDGT ASGSAHASKH FLNSHHHHRG DEHHHHHHQT DVVAAFQLLQ  240
DMSPYVKFGH FTANQAILEA VAHDRRIHIV DYDIMEGIQW ASLMQALVSR KDGPPAPHLR  300
ITALSRGSAG GRRSIGTVQE TGRRLVAFAA SIGQPFSFHQ CRLDSDEAFR PAALKLVKGE  360
ALLMNCMLNL PHFSYRSPES VASFLSGSKS LSPRLITLVE EEASLAPAAP GGEGAFVARF  420
MDLLYQYSAV YDSLEAGFPM QSRARALVER IFLGPRISGS LGRVYRARGE ESSSWGEWLA  480
AAGFRASPVS SANICQAKLL LGLFNDGYRV EELASNRLVL GWKSRRLLSA SLWTSSSDSD  540
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-135GRAS family protein