PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON80419.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 792aa MW: 87690.9 Da PI: 7.241

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON80419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.4	6.5e-24	162	263	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + + + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + +++el+ PON80419.1 162 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QRRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFL--RGENGELR 257 99**************************853.3345679*********************************************..4499999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ PON80419.1 258 LGIRRA 263 ***996 PP
2	Auxin_resp	116.7	1.9e-38	288	369	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra+++eFv++++k++k+++++v++G+Rfk +f++eds+err+sG+v+g+ dldp+rW nSkWr+L PON80419.1 288 VANAVSTKSMFHVFYSPRATHAEFVIPYQKFLKSIRNPVTIGTRFKTRFDMEDSPERRCSGVVTGICDLDPYRWANSKWRCL 369 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence
MEIDLNHVVA EVEKNVYCNG DCEKGSCVCC LSSSTSSCSS NSSSAPVSSS IYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQVAPFSPV ELPTFDLQPQ IFCKVINVQL LANKENDEVY 120 THVTLLPQPE LIGVKQEGKD LEESGGDEGV GGLPTKSTPH MFCKTLTASD TSTHGGFSVP 180 RRAAEDCFPP LDYKQRRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVNQKNL 240 VSGDAVLFLR GENGELRLGI RRAVRPRNGL PDSIVRNQNS YSNVLSLVAN AVSTKSMFHV 300 FYSPRATHAE FVIPYQKFLK SIRNPVTIGT RFKTRFDMED SPERRCSGVV TGICDLDPYR 360 WANSKWRCLM VRWDEDIGNN HQERVSPWEI DPSVSLPPLS IQSSPRLKKM RTSLHATPPS 420 NPMTAGGGGF LDFEESVRSS KVLQGQENIG FISPVYGCDT VNHPLDFEMR SPAHQSLASN 480 TTRKATMNEF VRAQPTYTGF AESSRFPKVL QGQEICQLRS LAGKTNLNLG AWGKSTLGCT 540 SFNTYQAAKP SFFSLASESL QNTYFPYGDV HRAGSNPSIH SNTTTFPIEN VNMNQYSIQT 600 GIIRNEVGRP TISNELKPQE KISGLPTLET NLRNPKDDSF GGTVTGCKLF GFSLTGETTA 660 PNSQSASKRS CTKVHKQGSL VGRAIDLSKL NGYGDLLSEL EWLFNMEGLL KDPDKGWRIL 720 YTDSENDVMV VGDDPWHEFC NVVSKIHIYT REEVEKMTFG VTSDDQSCLE QAPVSKSSSV 780 GQPDSSPTVI RV

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence

MEIDLNHVVA EVEKNVYCNG DCEKGSCVCC LSSSTSSCSS NSSSAPVSSS IYLELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQVAPFSPV ELPTFDLQPQ IFCKVINVQL LANKENDEVY  120
THVTLLPQPE LIGVKQEGKD LEESGGDEGV GGLPTKSTPH MFCKTLTASD TSTHGGFSVP  180
RRAAEDCFPP LDYKQRRPSQ ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVNQKNL  240
VSGDAVLFLR GENGELRLGI RRAVRPRNGL PDSIVRNQNS YSNVLSLVAN AVSTKSMFHV  300
FYSPRATHAE FVIPYQKFLK SIRNPVTIGT RFKTRFDMED SPERRCSGVV TGICDLDPYR  360
WANSKWRCLM VRWDEDIGNN HQERVSPWEI DPSVSLPPLS IQSSPRLKKM RTSLHATPPS  420
NPMTAGGGGF LDFEESVRSS KVLQGQENIG FISPVYGCDT VNHPLDFEMR SPAHQSLASN  480
TTRKATMNEF VRAQPTYTGF AESSRFPKVL QGQEICQLRS LAGKTNLNLG AWGKSTLGCT  540
SFNTYQAAKP SFFSLASESL QNTYFPYGDV HRAGSNPSIH SNTTTFPIEN VNMNQYSIQT  600
GIIRNEVGRP TISNELKPQE KISGLPTLET NLRNPKDDSF GGTVTGCKLF GFSLTGETTA  660
PNSQSASKRS CTKVHKQGSL VGRAIDLSKL NGYGDLLSEL EWLFNMEGLL KDPDKGWRIL  720
YTDSENDVMV VGDDPWHEFC NVVSKIHIYT REEVEKMTFG VTSDDQSCLE QAPVSKSSSV  780
GQPDSSPTVI RV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein