PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON79253.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | C2H2 | ||||||||
Protein Properties | Length: 483aa MW: 53488.5 Da PI: 7.8133 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.4 | 5.8e-06 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PON79253.1 84 YVCEICNQGFQRDQNLQMHRRRH 106 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.4e-05 | 161 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ PON79253.1 161 WVCDKCSKAYAVQSDYKAHLKTC 183 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence |
MLEKSNNTAS SSGAADPSSS SDHNHHHQNH YAFPNNSCEN GVNTNSNNNN NCNSKRKRRP 60 AGTPDPDAEV VSLSPKTLLE SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRETQEV 120 KKRVFVCPET SCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ WVCDKCSKAY AVQSDYKAHL 180 KTCGTRGHSC DCGRVFSRVE SFIEHQDSCT VRQVRPELQA LQSAATAAAC SSRTASSTSP 240 SSDGNFGNIA APFPAGVILN LPRPTEPNMF LSSSSERAST NKHSITNIST NQHQQNLLEL 300 QLLPSSEALG RSMQNSYEEN HATHLKLSIG SFDSEKSELP NEPNLDAMRI SNGGVSATEP 360 VAALEVSRVR DFANEEMKLA MAEKSYAEDA RREAKRQIEM AEMEFTSAKR IRQQAQAELE 420 KAQLLREQAT KKVSSTILQI TCQSCKQQFQ MTPSAVGGPP DETTSLAMSY MSSATTEGEG 480 EGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 60 | KRKRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-131 | C2H2 family protein |