PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON78980.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 677aa MW: 73638 Da PI: 7.6214

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON78980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.5	1.9e-07	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg PON78980.1 273 PCPEFRK-GSCQKGDACEYAHG 293 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MCSGSKNKLN NNPSKVIMDS GFPKQKDGGF QSEYSVLLEL AASDDLDGFR RTVEEKGINV 60 VDQSSFWYGR RIGSKKMGFE ERTPLMIAAL FGSTKVLKYI IESGKVDVNR ACGSEQVTAL 120 HCATAGGSSS SLDVVKLLLE AYADADLVNA NGCKPIDLLA PGWKAPCGSR KRAIESMLKG 180 ETNSVTEEEE DELKVGSPLA SKEGAEKKEY PIDVSLPDIN NGVYGTDDFR MYSFKIKPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKYPYS CVPCPEFRKG SCQKGDACEY AHGVFESWLH 300 PAQYRTRLCK DETGCTRKVC FFAHKHEELR PVYASTGSAM PSPRSLAVSA ADMATLSPLS 360 LGKSSMPLPA TSTPPMSPLA ASSSPKNGGL WQNKVNLTPP ALQLPGSRLK TALCARDLGL 420 EMELLGLDSH TSQQQQQQQL MEEISRLSSP SYLKPTNLDD VFGSLDPSVL SQMQGLSLKA 480 STPTQLQSPT GLQIRQNMSQ LRASYPSNLS SSPVRKPTSF GFDSSSSVAA AVMNSRSAAF 540 AKRSQSFIDR GAANHLGFTA AANSASMMSS SSLSGWSSPD GKLDWAVQGD ELNKLKKSAS 600 FGFRNSNGGT ATTALRPSTI DEPDVSWVHS LVKDVSSERS GLFDAEKQHH YNLNKGVHEV 660 LPPWVEQLYI EQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MCSGSKNKLN NNPSKVIMDS GFPKQKDGGF QSEYSVLLEL AASDDLDGFR RTVEEKGINV  60
VDQSSFWYGR RIGSKKMGFE ERTPLMIAAL FGSTKVLKYI IESGKVDVNR ACGSEQVTAL  120
HCATAGGSSS SLDVVKLLLE AYADADLVNA NGCKPIDLLA PGWKAPCGSR KRAIESMLKG  180
ETNSVTEEEE DELKVGSPLA SKEGAEKKEY PIDVSLPDIN NGVYGTDDFR MYSFKIKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYPYS CVPCPEFRKG SCQKGDACEY AHGVFESWLH  300
PAQYRTRLCK DETGCTRKVC FFAHKHEELR PVYASTGSAM PSPRSLAVSA ADMATLSPLS  360
LGKSSMPLPA TSTPPMSPLA ASSSPKNGGL WQNKVNLTPP ALQLPGSRLK TALCARDLGL  420
EMELLGLDSH TSQQQQQQQL MEEISRLSSP SYLKPTNLDD VFGSLDPSVL SQMQGLSLKA  480
STPTQLQSPT GLQIRQNMSQ LRASYPSNLS SSPVRKPTSF GFDSSSSVAA AVMNSRSAAF  540
AKRSQSFIDR GAANHLGFTA AANSASMMSS SSLSGWSSPD GKLDWAVQGD ELNKLKKSAS  600
FGFRNSNGGT ATTALRPSTI DEPDVSWVHS LVKDVSSERS GLFDAEKQHH YNLNKGVHEV  660
LPPWVEQLYI EQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein