PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON77617.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 458aa    MW: 49513.8 Da    PI: 5.4279
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON77617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.21.7e-114964553374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lLl+cAe+v+ ++l  a  +L ++ el+sp g++ +R+ ayf+ AL+ar+ +s+ ++y+ l+ ++ + ++s + ++al+ ++ +sP++kfsh+taNqa
  PON77617.1  96 GLLLQCAECVAMDNLDDAGDILPEIAELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTNRTLTLTQSHRIFNALQSYNSISPLVKFSHFTANQA 194
                 58************************************************************************************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                 I +a++g +rvH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +  ++++L v+p E
  PON77617.1 195 IFQALDGVDRVHVIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGS----SAELLESTGRRLADFASSLGLPFEFHPLEGKIGSITDPSQLGVRPSE 289
                 ************************************************....9**************************988899999*********** PP

        GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                 a++V++++  h l+d ++s       +L+l+  l+Pk+++vveq+++h ++sFl rf+eal+yysalfd+l    +++s er++vE++l+g ei+n+va
  PON77617.1 290 ATVVHWMH--HCLYDVTGSDLG----TLRLLALLRPKLITVVEQDLSH-GGSFLGRFVEALHYYSALFDALGDVSGADSLERHTVEQQLFGCEIRNIVA 381
                 *******9..888888888888....**********************.789*******************7777************************ PP

        GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   g +r+ + + + +W e l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  PON77617.1 382 VGGPKRTGEVK-VDRWGEELKRVGFQPVSLGGNPAAQASLLLGMYPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 455
                 *****998887.9*************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    
MLQSLVTQSP IATTSSNSNP NPNSDPSSSS SSMKTKRVDR ELAAGDDDAA ADPSSKRPNS  60
GRNFSGKATV SGDKAVEEQD DELVVEGEST GLRLLGLLLQ CAECVAMDNL DDAGDILPEI  120
AELSSPFGTS PERVGAYFAH ALQARVISSC LGTYSPLTNR TLTLTQSHRI FNALQSYNSI  180
SPLVKFSHFT ANQAIFQALD GVDRVHVIDL DIMQGLQWPG LFHILASRSR KIRSMRITGF  240
GSSAELLEST GRRLADFASS LGLPFEFHPL EGKIGSITDP SQLGVRPSEA TVVHWMHHCL  300
YDVTGSDLGT LRLLALLRPK LITVVEQDLS HGGSFLGRFV EALHYYSALF DALGDVSGAD  360
SLERHTVEQQ LFGCEIRNIV AVGGPKRTGE VKVDRWGEEL KRVGFQPVSL GGNPAAQASL  420
LLGMYPWKGY TLVEENGCLK LGWKDLSLLT ASAWQPSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein