PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON77494.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 378aa MW: 41768.3 Da PI: 6.8429

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON77494.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	45	1.8e-14	304	330	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +ktelC+ + +tG C+yGd C+FaHg+ PON77494.1 304 FKTELCNKWEETGACPYGDHCQFAHGM 330 79***********************95 PP
2	zf-CCCH	20.5	8.7e-07	342	367	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte+Cr +++ C+yG rC+F H+ PON77494.1 342 YKTEICRMVLAGDRCPYGHRCHFRHS 367 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MESDAFSPQS ETNTASPNSP RFAAMAASTC QNFLDVSPET RDFGTNFFSL YRAIFQSRSP 60 QIPSSLSLTP STRSPSSAGG DDNEISTEHR LKQARRILEQ QELNDYCDLI EAHLNDLSKD 120 IDYLRRENAE LRSVNGELLK LISSPAAFRG FLLSSTNQSL IDRFRRLDLG GVRTTTSTHD 180 VGHGGSEDFS DISPTSVMET NRFERRNPDP RVSLPKSISV RSTGYQKANQ PAGSSREGPS 240 RGSTTRPRAP TSTVSGTQRV YVPGVSGSGG GDSGSSSSGG MQKEVEEENM QGGVELEVFN 300 QGMFKTELCN KWEETGACPY GDHCQFAHGM AELRPVIRHP RYKTEICRMV LAGDRCPYGH 360 RCHFRHSLTE LERLMLPR

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MESDAFSPQS ETNTASPNSP RFAAMAASTC QNFLDVSPET RDFGTNFFSL YRAIFQSRSP  60
QIPSSLSLTP STRSPSSAGG DDNEISTEHR LKQARRILEQ QELNDYCDLI EAHLNDLSKD  120
IDYLRRENAE LRSVNGELLK LISSPAAFRG FLLSSTNQSL IDRFRRLDLG GVRTTTSTHD  180
VGHGGSEDFS DISPTSVMET NRFERRNPDP RVSLPKSISV RSTGYQKANQ PAGSSREGPS  240
RGSTTRPRAP TSTVSGTQRV YVPGVSGSGG GDSGSSSSGG MQKEVEEENM QGGVELEVFN  300
QGMFKTELCN KWEETGACPY GDHCQFAHGM AELRPVIRHP RYKTEICRMV LAGDRCPYGH  360
RCHFRHSLTE LERLMLPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-65	C3H family protein