PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON77388.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 700aa    MW: 78600.6 Da    PI: 6.638
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON77388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.92.8e-1193276981374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+av+++d++ a++lL+++++++sp gd +qRla++f+ +L+arla+++s++yk l +++ts    +++l+a++l+  ++P+ k+s+++ N
  PON77388.1 327 LRTLLIQCAQAVAADDHRSANELLKQVRQHSSPFGDGTQRLASCFADGLEARLAGTGSQIYKGLVSKRTS---AADVLKAYRLYLAACPFRKMSNFASN 422
                 6789************************************************************999999...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I++ + +++rvH+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g   +e++eetg+rL+ +A++++vpfe+n+ +ak++e+++le+L++
  PON77388.1 423 KTIMNVTTKATRVHVIDFGILYGFQWPTLIQRLSMRDGGPPKLRITGIEFPQPGfrPAERVEETGRRLKAYAKSFKVPFEYNA-IAKKWETITLEDLNI 520
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E+l+Vn+  + ++lldesv++es+r+ vL l+++++P+++++   +  +n++ F++rf eal ++salfd+le+ +pr + er+ +E+e++gre+ 
  PON77388.1 521 DSDEVLIVNCLNRGKNLLDESVTVESARNVVLALIRKINPDIFIHGIVNGAYNAPFFVTRFREALFHFSALFDMLEMIVPRGEPERMLIEKEIFGREAL 619
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+aceg er+er e++++W+ r++++GF + p++ +++ +a   +r ++   + ++e+sg+l++gWk+r ++++S+W+
  PON77388.1 620 NVIACEGWERVERPESYKQWQIRIMRSGFVQQPIDRSIMRKATEKVRSTYHSDFIIDEDSGWLLQGWKGRIIFAISSWK 698
                 **************************************************777*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    
METPSNGNSL SSVSHEVNSP EDCDFSDTVL KYISQMLMEE EDMEDKTCSV QESSDLQAAE  60
KSFYEVLGKK YPPSPEQSHR HIFQNGESPD ETFTTNSNND INSSVYSGEY LGDHTLHHPN  120
MGDYTSQLHF LPGYGVSQSS YSSSNSAISS LDGLLDSPSS IVQVPDLSSE SRSVWQFRKG  180
VEEASRFLPT RNEMVANLEA NGFLAQDPPR VGTNEVSVKS EKKDDGECFP GSSRGRKNPY  240
REDKDLEEER SSKQAAVYIE STLRSKMFDL VLLSSLGDGE AHLTSFRESL RSELTKSMLQ  300
NGQLKGSNGG KGSRGKKVGR KKEVVDLRTL LIQCAQAVAA DDHRSANELL KQVRQHSSPF  360
GDGTQRLASC FADGLEARLA GTGSQIYKGL VSKRTSAADV LKAYRLYLAA CPFRKMSNFA  420
SNKTIMNVTT KATRVHVIDF GILYGFQWPT LIQRLSMRDG GPPKLRITGI EFPQPGFRPA  480
ERVEETGRRL KAYAKSFKVP FEYNAIAKKW ETITLEDLNI DSDEVLIVNC LNRGKNLLDE  540
SVTVESARNV VLALIRKINP DIFIHGIVNG AYNAPFFVTR FREALFHFSA LFDMLEMIVP  600
RGEPERMLIE KEIFGREALN VIACEGWERV ERPESYKQWQ IRIMRSGFVQ QPIDRSIMRK  660
ATEKVRSTYH SDFIIDEDSG WLLQGWKGRI IFAISSWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein