PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON76123.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 586aa MW: 64568.8 Da PI: 7.8214

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON76123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.4e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l PON76123.1 59 KGGWTPQEDETLRSAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	59.2	9.4e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++ ++v ++G W++Ia+ ++ gR +kqc++rw+++l PON76123.1 111 KGPWTQEEDKKITELVSKYGATKWSLIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	52.8	8.9e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT +E++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ PON76123.1 163 KDAWTLDEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence
MAEVKLEECC LENKQSMAAS SSSVSEGSGS VFFKSPGVCS PASTSPTHRR TSGPIRRAKG 60 GWTPQEDETL RSAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDK 120 KITELVSKYG ATKWSLIAKS LPGRIGKQCR ERWHNHLNPE IRKDAWTLDE ELALMNAHRI 180 HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFFMNTGN LPPVTKSNPQ NGLKDTNKCA 240 ATKKSLGCSN KELDSTVHTL GNTVVPKIDE DGKHQLDSPR IPCSMGGSSS APLHESADSE 300 GVESKPGSNM DPNYSNLESV LKFENCGINR EPNIEDCLMN KESQNCDINS DLKFDDYGFN 360 SEVKEKVFGT PLPSEALMCG SLYYELPQLD DCIPVDSDLS SMHCLQHEFN SSTFSSPVSC 420 FTPPCVKGQG LSLASPESVL KMAAMTFPNT PSILRKRKNK PQTPLLPNKI EKLDRESNGD 480 MFHASQDRDG TNNSLEMPGS QDGSLCRSPS CHGINSIGPS GKGFNASPPY RLRSKRTAVF 540 NKSVEKQLEF TFDKECQGNI KSLEFSAKAS SPVTEDCSHA TKMGVT

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence

MAEVKLEECC LENKQSMAAS SSSVSEGSGS VFFKSPGVCS PASTSPTHRR TSGPIRRAKG  60
GWTPQEDETL RSAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDK  120
KITELVSKYG ATKWSLIAKS LPGRIGKQCR ERWHNHLNPE IRKDAWTLDE ELALMNAHRI  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFFMNTGN LPPVTKSNPQ NGLKDTNKCA  240
ATKKSLGCSN KELDSTVHTL GNTVVPKIDE DGKHQLDSPR IPCSMGGSSS APLHESADSE  300
GVESKPGSNM DPNYSNLESV LKFENCGINR EPNIEDCLMN KESQNCDINS DLKFDDYGFN  360
SEVKEKVFGT PLPSEALMCG SLYYELPQLD DCIPVDSDLS SMHCLQHEFN SSTFSSPVSC  420
FTPPCVKGQG LSLASPESVL KMAAMTFPNT PSILRKRKNK PQTPLLPNKI EKLDRESNGD  480
MFHASQDRDG TNNSLEMPGS QDGSLCRSPS CHGINSIGPS GKGFNASPPY RLRSKRTAVF  540
NKSVEKQLEF TFDKECQGNI KSLEFSAKAS SPVTEDCSHA TKMGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-149	MYB family protein