PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON74198.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 720aa MW: 78234.9 Da PI: 6.6941

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON74198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.7e-08	297	317	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PON74198.1 297 PCPDFRK-GACRRGDLCEYAHG 317 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MCGGPEHSKT SSSSTVEIAS NTKDMSTLSV KAEDSCGSLL ELASNNDVEG FKRSIEQDSS 60 INDVGLWYSR CKGAKHIVPD YRTPLMVAAT YGSVDVLKLV LSCTEVDVNL SCGLHKSTAL 120 HCAASGGSAN ALDVVKLLLS AGADPNSMDC NGHRPVDVLV VHPKLQGMRV MFEELLTKDA 180 YDCSIGEHPM NLSVNCSNSD SSTLSSSPDN EVQSPAISKI TDLPPISTLE KKEYPIDPSI 240 PDIKNSIYAT DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD 300 FRKGACRRGD LCEYAHGVFE CWLHPAQYRT RLCKDGMSCN RRVCFFAHRT EDLRPLYVST 360 GSGVPSPRAS ASAPNGPSVM DMAAALSLLP GSPSSVSAMS PSPFGQPMSP SANGMSHSSM 420 AWPQPNVPTL HLPGSNLQSS RLRSSLSARD IAPEDLNMLL EFDAQQQLLN DMNCFSRPRL 480 SSSSMSRPCR SKTLTPSNLD ELFSAEISSS PRYSDHMTAS TFSPTHKSAV LNQFQQQQSM 540 LSPINTTVLS PKTVEHPLLL QASFAVQSPG RMSPRSVEPV SPMSARLSAF SQREKQHQQL 600 RSLSSRDLGS NNTTSIVGSP ASSWSKWGPP NGKLDWSVNG EDHSPMRRSS SFEFGNNGEE 660 PDLSWVQSLV KESPPEMMKD KAAPSVTGAA ASGEGLNSNS QIESIDHSVL GAWVEQMQLA

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MCGGPEHSKT SSSSTVEIAS NTKDMSTLSV KAEDSCGSLL ELASNNDVEG FKRSIEQDSS  60
INDVGLWYSR CKGAKHIVPD YRTPLMVAAT YGSVDVLKLV LSCTEVDVNL SCGLHKSTAL  120
HCAASGGSAN ALDVVKLLLS AGADPNSMDC NGHRPVDVLV VHPKLQGMRV MFEELLTKDA  180
YDCSIGEHPM NLSVNCSNSD SSTLSSSPDN EVQSPAISKI TDLPPISTLE KKEYPIDPSI  240
PDIKNSIYAT DEFRMFSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD  300
FRKGACRRGD LCEYAHGVFE CWLHPAQYRT RLCKDGMSCN RRVCFFAHRT EDLRPLYVST  360
GSGVPSPRAS ASAPNGPSVM DMAAALSLLP GSPSSVSAMS PSPFGQPMSP SANGMSHSSM  420
AWPQPNVPTL HLPGSNLQSS RLRSSLSARD IAPEDLNMLL EFDAQQQLLN DMNCFSRPRL  480
SSSSMSRPCR SKTLTPSNLD ELFSAEISSS PRYSDHMTAS TFSPTHKSAV LNQFQQQQSM  540
LSPINTTVLS PKTVEHPLLL QASFAVQSPG RMSPRSVEPV SPMSARLSAF SQREKQHQQL  600
RSLSSRDLGS NNTTSIVGSP ASSWSKWGPP NGKLDWSVNG EDHSPMRRSS SFEFGNNGEE  660
PDLSWVQSLV KESPPEMMKD KAAPSVTGAA ASGEGLNSNS QIESIDHSVL GAWVEQMQLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein