PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON73637.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

TCP

Protein Properties

Length: 401aa MW: 44491.9 Da PI: 8.2632

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON73637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.7	4.4e-34	54	205	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssas 83 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ + s+++a ++++ PON73637.1 54 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLpmppsgnfslltpqpegnSTTTAPQSND-------- 144 78*************************************************************4443333333332222221111111122........ PP TCP 84 nsssg............kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135 + + ++++ + ++ s++++++ ++ +ak+++ ar++t+++ + +++ PON73637.1 145 ----QegfktnsesnidQLQSASRLPGSNFWSSSTNSSSDAlWRSAKSKEVARDQTANDEKENWR 205 ....1223222222332333333344444444444444444455589999999999888877765 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MIKNPKDTSD FPPREEGNSN DGKVTKASSS TTTSSTPWLR LKDPRIVRVS RVFGGKDRHS 60 KVCTIRGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLLNAAKDEI DELPPLPMPP 120 SGNFSLLTPQ PEGNSTTTAP QSNDQEGFKT NSESNIDQLQ SASRLPGSNF WSSSTNSSSD 180 ALWRSAKSKE VARDQTANDE KENWRSSRIN EVEKEEPNGR EGSNNLLQRS QNVNHTFFPG 240 VINNAIPNGA TYRWEPQNYP LSFLGGSSHG FTPQTDQLQY LQPSTLSLSS TGSQFLVCPP 300 AGITTTTQTY FPSTAASQHV EIDHHPRQVN HFHQMLSSNN PQSNLFPNSL LPSSSTTQSM 360 RVPFHFSTAM SSSSSKIVHF SPNDTSGRQQ NKKQEDQFSS E

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MIKNPKDTSD FPPREEGNSN DGKVTKASSS TTTSSTPWLR LKDPRIVRVS RVFGGKDRHS  60
KVCTIRGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLLNAAKDEI DELPPLPMPP  120
SGNFSLLTPQ PEGNSTTTAP QSNDQEGFKT NSESNIDQLQ SASRLPGSNF WSSSTNSSSD  180
ALWRSAKSKE VARDQTANDE KENWRSSRIN EVEKEEPNGR EGSNNLLQRS QNVNHTFFPG  240
VINNAIPNGA TYRWEPQNYP LSFLGGSSHG FTPQTDQLQY LQPSTLSLSS TGSQFLVCPP  300
AGITTTTQTY FPSTAASQHV EIDHHPRQVN HFHQMLSSNN PQSNLFPNSL LPSSSTTQSM  360
RVPFHFSTAM SSSSSKIVHF SPNDTSGRQQ NKKQEDQFSS E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	4e-48	TCP family protein