PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON73252.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SBP

Protein Properties

Length: 1067aa MW: 118581 Da PI: 8.5554

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON73252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	106.8	1.5e-33	136	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS............SEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs............rfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv++++qrfCqqCs rfh lsefDe+krsCrrrLa+hn+rrrk+q+ PON73252.1 136 MCQVDNCKEDLSSAKDYHRRHKVCELHSKSTKALVANQMQRFCQQCSsgksqlsrfaasRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 225 6*******************************************55555555555559*************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1067 aa Download sequence
MEEVGAQVVP PIFIHQRLQA MPKKRDLPYQ TPNFPIDNWN PKVWDWDTVR FVAKPLDSDP 60 LRLSSTSTST VDHTKTEEPP GPPPPPVTFK KKPSATAAAD EDDATLRLNL GGFDDSATRP 120 NKRVRSGSPG STAYPMCQVD NCKEDLSSAK DYHRRHKVCE LHSKSTKALV ANQMQRFCQQ 180 CSSGKSQLSR FAASRFHPLS EFDEGKRSCR RRLAGHNRRR RKTQPDDVGS RLMLPGDNRD 240 NRTNAHLDIF NLLATVARVQ GGKNDDKNMS CSSLPDKEQL LQILSKINSL PLPVDLAAKL 300 HNLVTLNRKI SEQTSSDHHD KLNGRASPST MDLLAALTAT LAPSPPDAIA TLSQRSSHSS 360 DSGSGKTKLN CYDQPNAPAS HKRLPQDFPS VGGDRSSTSY QSPMEDSDCQ VQETRVNLPL 420 QLFSSSPEND SPPKLASSRK YFSSDSSNPI DERSPSASPP VVQKLFPMQT MAETVKSEKR 480 SASREIDVNV DSSRINGCNM PFDLFRGSNK ATDAGSIQSV PYQAGYTSSG SDHSPSSLNS 540 DVQDRTGRIL FKLFDKDPSH FPGTLRAQIF NWLSNSPSEM ESYIRPGCVI LSVYVSMPSA 600 SWEQLQENLL QHLSSLVQSS ASDFWRDGRF LVHTGRQLAS HKDGKFRLCK SWRTWTSPEL 660 ISVTPLAVEG GQETSLKLRG RNLNNLGTKI HCTYMGGYTT KEVRGSTYHG TMYEEINLCD 720 FKIHDASRGV LGRCFIEVEN GLKGNSFPVI IADASICKEL RVFESVFDGK ERVRDIIAED 780 QSHDDGRPRS KEEVLHFLNE LGWLFQRKRT SSFLDGPNYS LGRFKFLLTF SVERNCSALM 840 KTLLDILVER NSVGDELSRE AVEMLSDIQL LHRAVKRRCR KMVDLLINYS VFGSNDVSKK 900 YIFPPNHVGP GYITPLHLAA CMSASDDLID ALTNDPQEIG LNSWNSLLDA NGQTPHAYAL 960 MTNNQSYIKL VSRKLGDRIN GQITLTVGNG MSTEFKQGRS SCAKCAVAAT KYYRRVPGAQ 1020 GLLQRPYVHS MLAIAAVCVC VCLFLRSVPD IGSVDPFKWE NLDYGTI

Sequence ? help Back to Top

Protein Sequence Length: 1067 aa Download sequence

MEEVGAQVVP PIFIHQRLQA MPKKRDLPYQ TPNFPIDNWN PKVWDWDTVR FVAKPLDSDP  60
LRLSSTSTST VDHTKTEEPP GPPPPPVTFK KKPSATAAAD EDDATLRLNL GGFDDSATRP  120
NKRVRSGSPG STAYPMCQVD NCKEDLSSAK DYHRRHKVCE LHSKSTKALV ANQMQRFCQQ  180
CSSGKSQLSR FAASRFHPLS EFDEGKRSCR RRLAGHNRRR RKTQPDDVGS RLMLPGDNRD  240
NRTNAHLDIF NLLATVARVQ GGKNDDKNMS CSSLPDKEQL LQILSKINSL PLPVDLAAKL  300
HNLVTLNRKI SEQTSSDHHD KLNGRASPST MDLLAALTAT LAPSPPDAIA TLSQRSSHSS  360
DSGSGKTKLN CYDQPNAPAS HKRLPQDFPS VGGDRSSTSY QSPMEDSDCQ VQETRVNLPL  420
QLFSSSPEND SPPKLASSRK YFSSDSSNPI DERSPSASPP VVQKLFPMQT MAETVKSEKR  480
SASREIDVNV DSSRINGCNM PFDLFRGSNK ATDAGSIQSV PYQAGYTSSG SDHSPSSLNS  540
DVQDRTGRIL FKLFDKDPSH FPGTLRAQIF NWLSNSPSEM ESYIRPGCVI LSVYVSMPSA  600
SWEQLQENLL QHLSSLVQSS ASDFWRDGRF LVHTGRQLAS HKDGKFRLCK SWRTWTSPEL  660
ISVTPLAVEG GQETSLKLRG RNLNNLGTKI HCTYMGGYTT KEVRGSTYHG TMYEEINLCD  720
FKIHDASRGV LGRCFIEVEN GLKGNSFPVI IADASICKEL RVFESVFDGK ERVRDIIAED  780
QSHDDGRPRS KEEVLHFLNE LGWLFQRKRT SSFLDGPNYS LGRFKFLLTF SVERNCSALM  840
KTLLDILVER NSVGDELSRE AVEMLSDIQL LHRAVKRRCR KMVDLLINYS VFGSNDVSKK  900
YIFPPNHVGP GYITPLHLAA CMSASDDLID ALTNDPQEIG LNSWNSLLDA NGQTPHAYAL  960
MTNNQSYIKL VSRKLGDRIN GQITLTVGNG MSTEFKQGRS SCAKCAVAAT KYYRRVPGAQ  1020
GLLQRPYVHS MLAIAAVCVC VCLFLRSVPD IGSVDPFKWE NLDYGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	873	878	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein