PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON72924.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 453aa MW: 51371.6 Da PI: 5.9156

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON72924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.3e-12	228	279	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ PON72924.1 228 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 279 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MFRYWYALDH LRTQQTPKFC PYAPMPPNFA ALDNYTIDHH HQQHHEQSHI DDTSAADQND 60 DRLMVNYLLN MNNNNNNPHH HHQQQQLSFA DVMQFADFGP KLGLNQTNKI PEEQEEDHDQ 120 PGNDMVDPVY FLKFPVLNDK NIMEDHRQSQ SINVVPLPPA GNDVVCQVKD KEIVREDQDH 180 DDSSVQLQFL GEDLQKMNNP SSEPNNNKNN NKRKRPRTVK TSEEVESQRM THIAVERNRR 240 KQMNEHLRVL RSLMPGSYVQ RGDQASIIGG AIEFVRELEQ LLQCLESQKR RRLLGDQAPR 300 QQVIGADPGG GGGGGGGVAV VPVQPNPGGP FFPPLPLPND QMMNKFVDFE TGVGLREETA 360 ESKSCLADVE VKLLGFDAMI KILSRRRPGQ LIKTIAALED LQFNILHTNI TTIEQTVLYS 420 FNVKVTSESR FTAEDIASSV QQIFSFIHAN SSM

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MFRYWYALDH LRTQQTPKFC PYAPMPPNFA ALDNYTIDHH HQQHHEQSHI DDTSAADQND  60
DRLMVNYLLN MNNNNNNPHH HHQQQQLSFA DVMQFADFGP KLGLNQTNKI PEEQEEDHDQ  120
PGNDMVDPVY FLKFPVLNDK NIMEDHRQSQ SINVVPLPPA GNDVVCQVKD KEIVREDQDH  180
DDSSVQLQFL GEDLQKMNNP SSEPNNNKNN NKRKRPRTVK TSEEVESQRM THIAVERNRR  240
KQMNEHLRVL RSLMPGSYVQ RGDQASIIGG AIEFVRELEQ LLQCLESQKR RRLLGDQAPR  300
QQVIGADPGG GGGGGGGVAV VPVQPNPGGP FFPPLPLPND QMMNKFVDFE TGVGLREETA  360
ESKSCLADVE VKLLGFDAMI KILSRRRPGQ LIKTIAALED LQFNILHTNI TTIEQTVLYS  420
FNVKVTSESR FTAEDIASSV QQIFSFIHAN SSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	240	RMTHIAVERNRR
2	289	293	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-118	bHLH family protein