PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON72385.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 624aa    MW: 70777.2 Da    PI: 5.4388
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON72385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.82.2e-832416221374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaal............k 82 
                 lv+lLl++Ae v  ++  +a++lL   ++las++++p++R+++ f+e L++++ ++  +  + +++s+ ++++            +             
  PON72385.1 241 LVHLLLAAAEKVGYQQYDRATRLLRSCQHLASSRANPVERVVFLFAESLREKIDKENGNSTRRISTSNCTTDTivrkrN-----NTeiayglstniisV 334
                 68*****************************************************666666667666666666443331.....222333444443333 PP

        GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                 + ++  P+l + ++ a qaI+e++e+e+++H+iD++i  G+QW  L+q+La R+   ++   l+iT+vg+ +  ++ +++et++rL ++Ae l++pf+f
  PON72385.1 335 TCHQQLPFLHVLQFPAIQAIVESFESETKLHVIDLEIRSGTQWTGLMQELAGRNdqdRPLELLKITAVGKTQ--NEVKMKETQNRLMNLAEFLNIPFSF 431
                 388999***********************************************984344459********55..9************************ PP

        GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                 ++++ +++ed++   ++++++EalaV ++l l  + +++ +le+    +++++ sl+P ++vv+e ea++ns+sF++rf+eal +y a+fd++e+ + +
  PON72385.1 432 KPVILSDMEDINEALFETEEDEALAVYSSLLLRMMISRPRCLEK----LMRVITSLKPSIMVVIEVEANLNSPSFANRFIEALFFYGAFFDCFETCI-K 525
                 ******************************99999988888888....***********************************************97.6 PP

        GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++e ++++E+  l+  i+n+va+e+ er++r  +++ Wr+ +e+  + +++ls++   qa+l+ ++++ +    ve + ++l+ gWk+ p+ s+SaW+
  PON72385.1 526 QEEFKTTMEEI-LSMGIRNIVATENGERVNRSVSVGVWRAFFERYRMVEMKLSDSSLYQASLVAKRFGcGSSLGVERSGKCLMVGWKGTPIHSLSAWK 622
                 66788888888.********************************************************99999************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    
MANNPFFFVS PFNFDEIRGS GYGPSSTISD SQIDELQVLI KPKMNHFCGM DKLGADDDDR  60
YGCFNQHSNK VEKGVLVADL SEDQHEQQQE PKSNYSIFDD LDTSFTVFPP TQTINESTTD  120
HQHAYRDIKQ MPASTTQTSP FASLEILSNY ENGLKKLNNP GKNAILSNAE GGKNSDTSYP  180
MRRQKLSTEE IIRIAGSMYI QFYNSQETND VVQYHDFYTP MHPFGYALSG LSQGETRDVE  240
LVHLLLAAAE KVGYQQYDRA TRLLRSCQHL ASSRANPVER VVFLFAESLR EKIDKENGNS  300
TRRISTSNCT TDTIVRKRNN TEIAYGLSTN IISVTCHQQL PFLHVLQFPA IQAIVESFES  360
ETKLHVIDLE IRSGTQWTGL MQELAGRNDQ DRPLELLKIT AVGKTQNEVK MKETQNRLMN  420
LAEFLNIPFS FKPVILSDME DINEALFETE EDEALAVYSS LLLRMMISRP RCLEKLMRVI  480
TSLKPSIMVV IEVEANLNSP SFANRFIEAL FFYGAFFDCF ETCIKQEEFK TTMEEILSMG  540
IRNIVATENG ERVNRSVSVG VWRAFFERYR MVEMKLSDSS LYQASLVAKR FGCGSSLGVE  600
RSGKCLMVGW KGTPIHSLSA WKFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-51GRAS family protein