PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON70296.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family M-type_MADS
Protein Properties Length: 336aa    MW: 37604.3 Da    PI: 4.8826
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON70296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.42.9e-161655645
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 sn  v+fskRr g++ KA EL++ Cda++a++++s+tg+
  PON70296.1 16 ASNVFVSFSKRRRGLFQKAAELCTKCDAQIAIVVLSPTGN 55
                67889*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MAPKRSLAAM EDGERASNVF VSFSKRRRGL FQKAAELCTK CDAQIAIVVL SPTGNPFSFG  60
HSSVDDVLRH YLTNTTMGPP NFITDEHRYQ TQRIERLKFN LKQRKPQIND REFRVVSQLK  120
GWVEKELEEP KTVAELEFLR EKFNNVLGKI TRRLASSSGT TSTCLGGEID QGFHSVCPKT  180
DFVQYANMLQ QHLNTAIPSN SDLGFVDHPI NDMSYAEYGT SSNFPLNGFF TCQSGEFVGN  240
DDNNNFQFHT SDSEFLDHPL NDVDVSYAND DGTSSSRGGA GSRVDHGFTC QNNTDSVATD  300
DDISQFTSSD LEFLHNILND TSYANFGFTS RDNDFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-18M-type_MADS family protein