PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON68989.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 670aa MW: 74717.1 Da PI: 6.6787

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON68989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.4	1.5e-24	129	230	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el PON68989.1 129 FCKVLTASDTSTHGGFSVLRKHATEClpqldmtQ--STPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGEL 223 99************************999644..444569*********************************************..449999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ PON68989.1 224 RVGVRRH 230 *****97 PP
2	Auxin_resp	107.1	1.9e-35	255	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F v+Y+Pr+ s+F+++++k+++a+++k++vGmRfkm+fe+ed++err+sGt+vgv d++p +W +SkWrsLk PON68989.1 255 ASHAVSTQTMFVVYYKPRT--SQFIISLNKYLEAVNNKYAVGMRFKMRFEGEDAPERRFSGTIVGVDDISP-QWVDSKWRSLK 334 789*************6..9******************************************999.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MMANRGGSFS QPNVAAEGDV LYPELWRACA GPLVDVPQLR ERVYYFPQGH MEQLEASTNQ 60 TNQELNQRIP LFNLPSKILC QVINVQLLAE PETDEVYAQI TLMPESNQAE PTSPDPCLPE 120 LQRPTVHTFC KVLTASDTST HGGFSVLRKH ATECLPQLDM TQSTPTQELV AKDLHGYEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRRH ARQPTSMPSS 240 VISSQSMHLG VLATASHAVS TQTMFVVYYK PRTSQFIISL NKYLEAVNNK YAVGMRFKMR 300 FEGEDAPERR FSGTIVGVDD ISPQWVDSKW RSLKVQWDEA ASILRPDRVS PWEIEPSAPG 360 TLAQPAVVKN KRPRPLNDNL SLDTSNSTTS TVWNYGLTQS HDTAQLSVAA EGKRNENHVI 420 WRHRQTDAWL SSPRPTGSPH LQDTTEDSKS VSVGPVFPKQ NNDQISEQCD KGRKTETASS 480 FRLFGFEMID HSTNSPTVEK VAPQPISLSG TTQVSTFSVA ESEQKSGISK ASKETIPEQL 540 QASSKESQSK QGCSTSARSR TKVQMQGVAV GRAVDLSMLE GYTQLIDELE EMFDIKGQLR 600 PRNKWEIVFT DDEGDMMLLG DDLWQEFCKI VRRIFICSSQ DVKKMKSGSV LPISSLEGDG 660 TVLSSESAGN

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MMANRGGSFS QPNVAAEGDV LYPELWRACA GPLVDVPQLR ERVYYFPQGH MEQLEASTNQ  60
TNQELNQRIP LFNLPSKILC QVINVQLLAE PETDEVYAQI TLMPESNQAE PTSPDPCLPE  120
LQRPTVHTFC KVLTASDTST HGGFSVLRKH ATECLPQLDM TQSTPTQELV AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRRH ARQPTSMPSS  240
VISSQSMHLG VLATASHAVS TQTMFVVYYK PRTSQFIISL NKYLEAVNNK YAVGMRFKMR  300
FEGEDAPERR FSGTIVGVDD ISPQWVDSKW RSLKVQWDEA ASILRPDRVS PWEIEPSAPG  360
TLAQPAVVKN KRPRPLNDNL SLDTSNSTTS TVWNYGLTQS HDTAQLSVAA EGKRNENHVI  420
WRHRQTDAWL SSPRPTGSPH LQDTTEDSKS VSVGPVFPKQ NNDQISEQCD KGRKTETASS  480
FRLFGFEMID HSTNSPTVEK VAPQPISLSG TTQVSTFSVA ESEQKSGISK ASKETIPEQL  540
QASSKESQSK QGCSTSARSR TKVQMQGVAV GRAVDLSMLE GYTQLIDELE EMFDIKGQLR  600
PRNKWEIVFT DDEGDMMLLG DDLWQEFCKI VRRIFICSSQ DVKKMKSGSV LPISSLEGDG  660
TVLSSESAGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	371	375	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein