PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON67969.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GATA
Protein Properties Length: 350aa    MW: 37761.4 Da    PI: 6.1576
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON67969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17250283134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  PON67969.1 250 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 283
                 99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MIGPNFMDEI DCGSFFDHID DLLDFPCDDV DTGLGPSTDT KAFPSIWSTQ PDSLPGSDSV  60
FSGNSASDLS AELSVPYEDI VQLEWLSTFV EDSFSGGSLT INKEEESSLN KDSPRQQFQT  120
SSPVSVLESS SSCSGEKSGG PRSPETTTPG GGRRGRARSK RPRPATFNPR PAIQLISPTS  180
SVVEATQLFI AAPKSSSDSE NNFAESRPMI KIPKLVPVDQ KKKKKIKLTF PAAPAVETNQ  240
NQTSQAVRKC MHCEITKTPQ WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSL  300
HSNSHKKVLE MRTKGGEMVG VAGNATAASM NDAMPELIPN TNSSISLDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-42GATA family protein