PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON67968.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 675aa MW: 74489 Da PI: 6.5084

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON67968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.4	6.6e-24	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ l PON67968.1 126 FAKTLTQSDANNGGGFSVPRYCAETIfppldltAQPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGDL 220 89**************************996555555..8999*****************************************3..477888 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ PON67968.1 221 CVGIRRA 227 **996 PP
2	Auxin_resp	110.3	2e-36	277	360	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+t+++FevvY+Prast+eF+v++ v++a++++++ G Rfkm fetedss++++ +Gt+++v+ ++p++Wp+S+Wr+L+ PON67968.1 277 AATLAATGQPFEVVYYPRASTPEFCVRAPAVRAAMQIRWCSGLRFKMPFETEDSSRISWfMGTISSVQVANPIHWPDSPWRLLQ 360 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence
MITVMDSGRE PMKKGFEKCL DPQLWHACAG PLVQMPPVNS KVLYFPQGHA EHAQGSVDFG 60 NSRIPSLILC KVSAIRFMAD PDTDEVFAKM GLTPLRDNND FDVEDEGEYL GNNGIVVENP 120 EKPKSFAKTL TQSDANNGGG FSVPRYCAET IFPPLDLTAQ PPVQTILAKD VHGETWKFRH 180 IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRADNGDL CVGIRRAKKG IGCGHEYPSG 240 WNPSVGNYGS QYENRVLGKN GSGDLKGKVK AESVVEAATL AATGQPFEVV YYPRASTPEF 300 CVRAPAVRAA MQIRWCSGLR FKMPFETEDS SRISWFMGTI SSVQVANPIH WPDSPWRLLQ 360 VAWDEPDLLQ NVKRVNPWLV ELVSSIPAMH ISQFSPPRKK PRLPQNPDFA LVGQIPMPLL 420 STNFLSSSSP FCCIQDNVPA GIQGARHAQF GPYPSDLHLN ELQAGLLPLG FQQFDHTNPL 480 RNPVGDYMKR TENRENISCW LKMGHTTQDL KANVEMKTPH LLLFGQVILT EEQLSKSSSG 540 ENSSSDGNLD KTTNHSDGSG STENSSDGGS PWYKDHHNQR SDLLGLETGH CKVFIESDDV 600 GRTLDLSLLG SYQELYGKLA DMFGIEEGSG ILGNVLYRDA AGCVKHTGDE PFSEFLKTAR 660 RLTIHTDSGS DNVGR

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence

MITVMDSGRE PMKKGFEKCL DPQLWHACAG PLVQMPPVNS KVLYFPQGHA EHAQGSVDFG  60
NSRIPSLILC KVSAIRFMAD PDTDEVFAKM GLTPLRDNND FDVEDEGEYL GNNGIVVENP  120
EKPKSFAKTL TQSDANNGGG FSVPRYCAET IFPPLDLTAQ PPVQTILAKD VHGETWKFRH  180
IYRGTPRRHL LTTGWSNFVN QKKLVAGDSI VFLRADNGDL CVGIRRAKKG IGCGHEYPSG  240
WNPSVGNYGS QYENRVLGKN GSGDLKGKVK AESVVEAATL AATGQPFEVV YYPRASTPEF  300
CVRAPAVRAA MQIRWCSGLR FKMPFETEDS SRISWFMGTI SSVQVANPIH WPDSPWRLLQ  360
VAWDEPDLLQ NVKRVNPWLV ELVSSIPAMH ISQFSPPRKK PRLPQNPDFA LVGQIPMPLL  420
STNFLSSSSP FCCIQDNVPA GIQGARHAQF GPYPSDLHLN ELQAGLLPLG FQQFDHTNPL  480
RNPVGDYMKR TENRENISCW LKMGHTTQDL KANVEMKTPH LLLFGQVILT EEQLSKSSSG  540
ENSSSDGNLD KTTNHSDGSG STENSSDGGS PWYKDHHNQR SDLLGLETGH CKVFIESDDV  600
GRTLDLSLLG SYQELYGKLA DMFGIEEGSG ILGNVLYRDA AGCVKHTGDE PFSEFLKTAR  660
RLTIHTDSGS DNVGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein