PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON67074.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

TCP

Protein Properties

Length: 442aa MW: 46352.1 Da PI: 9.0963

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON67074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.9	1.2e-36	55	223	2	112
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ PON67074.1 55 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPshfrssyfnpn 153 789******************************************************************999877777777775555544455566666 PP TCP 89 ..............................................kaaksaakskksqksaasalnlak 112 +++++a+++++s++s++ +ln++ PON67074.1 154 syqfgaaaasqfiktatewerssaiimdesqqrrvlfpagigllssSSSSEANSPSSSSSSSSMMLNFNS 223 6666666666666677777777777777777777777777777764333333355555555555555554 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEPENGIRSR PNFPLQLLEK KEEQAPCSTI SGSSEPNPLR PGSALQLPEP PKKAPPKRTS 60 TKDRHTKVDG RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQQAEP AVIAATGTGT 120 IPANFTSLNI SLRSSGSSMS APSHFRSSYF NPNSYQFGAA AASQFIKTAT EWERSSAIIM 180 DESQQRRVLF PAGIGLLSSS SSSEANSPSS SSSSSSMMLN FNSGNVSNIL QTKQELRDQA 240 AGLDAASAAA AAAAEAEAGQ RKRRQGLEQD LSPQQSAQNL MNSNNNNSNN YLLQSSSGSL 300 PASHNPIPAA FWMLPNNSAS NSNSNQLLAA AAGPVSGSHD PMWTFPNVSN TSNMYRGPIT 360 SGLHFMNFPP VALLPGQQLG SGAAAGGGGG GGGSDSHLGM LAAFNAYRPI LGGGAAESPV 420 SGSHQHRGGD DGHDNTSTTS HR

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEPENGIRSR PNFPLQLLEK KEEQAPCSTI SGSSEPNPLR PGSALQLPEP PKKAPPKRTS  60
TKDRHTKVDG RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQQAEP AVIAATGTGT  120
IPANFTSLNI SLRSSGSSMS APSHFRSSYF NPNSYQFGAA AASQFIKTAT EWERSSAIIM  180
DESQQRRVLF PAGIGLLSSS SSSEANSPSS SSSSSSMMLN FNSGNVSNIL QTKQELRDQA  240
AGLDAASAAA AAAAEAEAGQ RKRRQGLEQD LSPQQSAQNL MNSNNNNSNN YLLQSSSGSL  300
PASHNPIPAA FWMLPNNSAS NSNSNQLLAA AAGPVSGSHD PMWTFPNVSN TSNMYRGPIT  360
SGLHFMNFPP VALLPGQQLG SGAAAGGGGG GGGSDSHLGM LAAFNAYRPI LGGGAAESPV  420
SGSHQHRGGD DGHDNTSTTS HR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	265	QRKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-51	TCP family protein