PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON66414.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 298aa    MW: 33762.7 Da    PI: 6.9053
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON66414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
       PON66414.1 15 KGLWSPEEDLRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding551.8e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
       PON66414.1  68 RGTFSKQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113
                      899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MGCKSSDKPK PKHRKGLWSP EEDLRLRNYV LKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGT FSKQEEETIL TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVAKA  120
EEEMVTDQTK TQCTTSSSES SPSSEKNSNR IPSYESLDQM EKSLSTTDQS VNPNLYNLSR  180
DQQPKSSLPR LLFAEWLSVD QVNGPDSVNM VQPVVPRETF GHTLNFQDSM GHGILLNEGL  240
FGGDFQNGLS QVSDCDVLNS EFKFEDQISG SGFVDFISGS DVSIHDFNMH SDVMYTFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.14e-59MYB family protein