PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON64890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 382aa MW: 42722.8 Da PI: 6.9614 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5e-18 | 41 | 88 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl PON64890.1 41 RGPWTVEEDLTLFNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 88 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.5e-16 | 94 | 137 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ PON64890.1 94 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 137 7999******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 382 aa Download sequence |
MDSINNIVKS DGRSSISGNS SSSNSSVQSD QESEMISDLR RGPWTVEEDL TLFNYIANHG 60 EGRWNSLARC AGLKRTGKSC RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA 120 QHLPGRTDNE IKNYWRTRVQ KHAKQLKCDV NSKQFKDTMR YLWMPRLVER IQAATATAAS 180 STATATATHH QLNNMAISNN NFNQSPAAGQ AAAVIMPMNN SNTTFNDQFG GAASVTTYTP 240 ENSSSDSFGA QVSPVSELTA ENYYSTSTLN PNPPPPPPTH GQYSYHQVGY NNYYVPATDH 300 QSIMRTTTTT TTTAASTTPS SAGYDHNNLS SSTTTTDHQL GFQSMEQNSS YFNNWNLDQG 360 MDSLWDVEDI WLLQQHLNNG NF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-84 | MYB family protein |