PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON63924.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 735aa MW: 81307.7 Da PI: 5.0501

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON63924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.6e-14	499	546	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ PON63924.1 499 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 546 5899*********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MAAPPSSQLQ TMLQTAVQSV QWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVQPMEVS 60 AEEASLQRSQ QLRELYDSLS AGETNQPSRR PCAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGRAYTRKQ HVWLTGANEV DSKTFSRAIL AKSAGVQTVV CIPLLDGVVE FGTMERVQED 180 LGFIQHVKTF FVDHHHHHHQ INNLLPEKPA LSEHSTSNPA MSSDNPRFHS PPMRAAIYAT 240 ATDPPVAEEA NQDGEGDEED EDEDIDDQEE VDSDSEAEAE MDRNNGRPIS ADPNTPATTV 300 AVEPSELMQL DMSEDIRLGS PDDGSNNLDS DFHLLAVSSQ PEHHLCQPDH LYREESTKRW 360 PLVPDPTTGN IGLPLPPSGT TDPLEDLTQD DTHYSETVSS ILQNQPNLWA ESSSAGYVAY 420 SAQSAFAKWT TLGDRHSALY VSASSDTTSQ WILKYILFRV PLLHTKYREE NSPKCGGGGG 480 DAASRPFRKG GTHQDEMSAN HVMAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE 540 YVKQLRKKIQ DLEARNRVME LDQRSSAKHG GVQQRASSTG SLKEQRSGLT SADRIRVDPT 600 GSDRRKLRIV EGSCGAAKPR TVELSRSSLP VPPPLPPPSS PTTSSSSAET SVQVSIIEND 660 GLLELQCPYR EGLLLAVMQM LKELRIETTT VQSSLSNGFF GAQLRAKVKE NEIGKKASIV 720 EVKRAINQII PHNDD

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MAAPPSSQLQ TMLQTAVQSV QWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYDSLS AGETNQPSRR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGRAYTRKQ HVWLTGANEV DSKTFSRAIL AKSAGVQTVV CIPLLDGVVE FGTMERVQED  180
LGFIQHVKTF FVDHHHHHHQ INNLLPEKPA LSEHSTSNPA MSSDNPRFHS PPMRAAIYAT  240
ATDPPVAEEA NQDGEGDEED EDEDIDDQEE VDSDSEAEAE MDRNNGRPIS ADPNTPATTV  300
AVEPSELMQL DMSEDIRLGS PDDGSNNLDS DFHLLAVSSQ PEHHLCQPDH LYREESTKRW  360
PLVPDPTTGN IGLPLPPSGT TDPLEDLTQD DTHYSETVSS ILQNQPNLWA ESSSAGYVAY  420
SAQSAFAKWT TLGDRHSALY VSASSDTTSQ WILKYILFRV PLLHTKYREE NSPKCGGGGG  480
DAASRPFRKG GTHQDEMSAN HVMAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE  540
YVKQLRKKIQ DLEARNRVME LDQRSSAKHG GVQQRASSTG SLKEQRSGLT SADRIRVDPT  600
GSDRRKLRIV EGSCGAAKPR TVELSRSSLP VPPPLPPPSS PTTSSSSAET SVQVSIIEND  660
GLLELQCPYR EGLLLAVMQM LKELRIETTT VQSSLSNGFF GAQLRAKVKE NEIGKKASIV  720
EVKRAINQII PHNDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	505	510	ERRRRE
2	506	511	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-100	bHLH family protein