PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON63690.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 309aa    MW: 35096.4 Da    PI: 9.129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON63690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-092873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + + ++   +W ++a++++ g+t  ++   ++ 
       PON63690.1 28 KWTPEENKRFENALAVYDKDtpdRWVKVAEMIP-GKTVGDVMKQYRE 73
                     7********************************.****999998875 PP
2Myb_DNA-binding45.61.7e-14135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
       PON63690.1 135 PWTEEEHRQFLLGLEKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MYRGIEILSP ATYLQNSNWL FQESKAAKWT PEENKRFENA LAVYDKDTPD RWVKVAEMIP  60
GKTVGDVMKQ YRELEEDVSD IEAGLIPIPG YATNSFTLEW VNNQGFEGLK QFYSVGGKRG  120
TNTRPSDQER KKGVPWTEEE HRQFLLGLEK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF  180
IRQVTGGKDK RRSSIHDITT VNLPESKSPP PDCKRPPSSP DHSATVVQPA QQHSKITAMV  240
KQQYDWKPSI EGLPMVFNQI NSSAFAGPFC GISSYGSKLQ EQNLLSGNLR GSQFEPYGTL  300
YQMQSMHHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-123MYB family protein