PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON63053.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 1750aa MW: 191369 Da PI: 5.8123

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON63053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	802	843	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ + +G++ +k+Ia+ + ++t +c+++++k PON63053.1 802 PWTPEEKEIFMVKLATFGKD-FKRIASFLD-HKTTADCVEFYYK 843 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.3	1e-09	1019	1059	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av ++G + ++ I++++ R++ qck ++ PON63053.1 1019 EWTDEEKSIFIQAVSLYGRD-FAMISQCVR-SRSRDQCKVFFS 1059 6***************77.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1750 aa Download sequence
MPPEPLPWDR KDFFRERKHE RSESLGSVAR WRDSSHHGGS RELSRWGSAD FRRPLGHGKQ 60 GGWHFFPEES GHGYVSSRAS EKVLEDESCR SSISRGEGKY GRSSRENRGS YNQREWRGHS 120 WEANNGFSNT PGRAHDLNNE QKSRDDLPSY SSHSNGGFGN TWEQIQFKDQ HDKAGGSNGL 180 GTGQKCDREN SLGLNDWKPM KWTRSGSMSS RGSGFSHLSG SKSVGAVDSS EAKVETQTKN 240 ATPVQSPSAD ANACVTSARS EETTSRKKPR LGWGEGLAKY EKKKVDGPEV TLNKDGAIFA 300 GSNTEPSNSL SSSLFDKSPR VMSFSDCASP ATPSSVACSS SPGLEEKSFG KAVNIDNDSS 360 NLCGSPGPVS QNHTEGCSFN LEKLDFNSIA TLGSSLVELL QSDDPNSVDS SFVRSTAINK 420 LLVWKAEISK TLEVTETEID SLENELKSLN SIPGGSSPSA SSSLPKEDHL KSCEEQGVVT 480 HQIPRPALLQ IVSFGDAVVE KIPICNGDRE EICANVKEDD VDSPGTVTSK FVEPLSLAKS 540 VSSYDTLNDA AGDLNHSRLT NKEGQHSVPA SGGEETGPNT CVDCSMLTEG EVTPPVTDSL 600 GLCIDGEDKL NSAILSSNKE LAEGAHSVFN KLLPQDECNL DISRVCNASS WQNHTVVKEK 660 FARRKQFLKF KERVLTLKLK AYQHLWKEDM RLLSIRKHRA KSQKKFELSF RPVHSGYQKH 720 RSSIRSRFSS PAGSLSLVPT TEVINFTSKL LLDSQVKKCR DALQMPALIL DKKEKIVSRF 780 ISDNGLVEDP CAVEKERAMI NPWTPEEKEI FMVKLATFGK DFKRIASFLD HKTTADCVEF 840 YYKNHKSDSF EKKKKLDSGK QVKSLSNATY LMLGKKWNRE MNAASLDILG EASVIAANAD 900 VGIRSRQTCS GRLILGGLSE SKAPWGDDVT FERSSSLDIL GNDRETVAAD VLAGICGSLS 960 SEAMSSCITS SVDPGEGYKE WKSPKVDSVS RRPLTPDVTQ RLDDGTCSDE SCGEMDPTEW 1020 TDEEKSIFIQ AVSLYGRDFA MISQCVRSRS RDQCKVFFSK ARKCLGLDVI HPGPGNERTF 1080 TGDDANGSGS GSENACAREM GSGICSDKSG SKMDEDLPLS AMKMNLDESD PAENLISQTA 1140 LSREEEKDER EVLEHKRNVE ASESQVSDAC PTRGIPNLVS DGDSNVMKGV DEPKALPIRE 1200 SNSVLVSIET GRQNGDEQGF SVAELVSVCV GNDEPLNTDS VVGIKPVDEI SSDGLGNQME 1260 GLEEKCNAST SQQSGLEFVV HDSNSTGNTF HLVPDRSSCS GFSLNPDYQH QVSLELNSKD 1320 KSCVISLSQE TSLASANSMS LDSGAIQLEK NGNEDKMSTT LDFQESKDVC HISVCRDESY 1380 EHLTGLPLLT NAQSSQVLRA YPLQMPIKKE VNGDIRCRNV SEVQSLPKSD RSSNNHLFSQ 1440 DCYLQRCNNL KSESSMPEFP LMSPKIEQAI DHSKSRSQSL SDSENSGRSG GDVKLFGKIL 1500 SNPSSLNNSN SGYRENEEKE GSHEHKSSNK SSNLKFGNLH NSDENSALLK FDRNNYMSIE 1560 NVQMRNYAYW DGTRLQATFP TVPDSAILLA KYPAAFGNFP TSTTKMEQQT LQAVVKGNEL 1620 HVNGASVFPT REISNSNGMV DHPVFRSREA AKVQPFTVDV KQRADMFSEA QRRNGIEAIA 1680 SFQHQGRGMV GINVLGRGGI VVGGPCTTGV SDPVAALKMH FAKTEQQFGG QTSGIIREDE 1740 SWRGNGDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1750 aa Download sequence

MPPEPLPWDR KDFFRERKHE RSESLGSVAR WRDSSHHGGS RELSRWGSAD FRRPLGHGKQ  60
GGWHFFPEES GHGYVSSRAS EKVLEDESCR SSISRGEGKY GRSSRENRGS YNQREWRGHS  120
WEANNGFSNT PGRAHDLNNE QKSRDDLPSY SSHSNGGFGN TWEQIQFKDQ HDKAGGSNGL  180
GTGQKCDREN SLGLNDWKPM KWTRSGSMSS RGSGFSHLSG SKSVGAVDSS EAKVETQTKN  240
ATPVQSPSAD ANACVTSARS EETTSRKKPR LGWGEGLAKY EKKKVDGPEV TLNKDGAIFA  300
GSNTEPSNSL SSSLFDKSPR VMSFSDCASP ATPSSVACSS SPGLEEKSFG KAVNIDNDSS  360
NLCGSPGPVS QNHTEGCSFN LEKLDFNSIA TLGSSLVELL QSDDPNSVDS SFVRSTAINK  420
LLVWKAEISK TLEVTETEID SLENELKSLN SIPGGSSPSA SSSLPKEDHL KSCEEQGVVT  480
HQIPRPALLQ IVSFGDAVVE KIPICNGDRE EICANVKEDD VDSPGTVTSK FVEPLSLAKS  540
VSSYDTLNDA AGDLNHSRLT NKEGQHSVPA SGGEETGPNT CVDCSMLTEG EVTPPVTDSL  600
GLCIDGEDKL NSAILSSNKE LAEGAHSVFN KLLPQDECNL DISRVCNASS WQNHTVVKEK  660
FARRKQFLKF KERVLTLKLK AYQHLWKEDM RLLSIRKHRA KSQKKFELSF RPVHSGYQKH  720
RSSIRSRFSS PAGSLSLVPT TEVINFTSKL LLDSQVKKCR DALQMPALIL DKKEKIVSRF  780
ISDNGLVEDP CAVEKERAMI NPWTPEEKEI FMVKLATFGK DFKRIASFLD HKTTADCVEF  840
YYKNHKSDSF EKKKKLDSGK QVKSLSNATY LMLGKKWNRE MNAASLDILG EASVIAANAD  900
VGIRSRQTCS GRLILGGLSE SKAPWGDDVT FERSSSLDIL GNDRETVAAD VLAGICGSLS  960
SEAMSSCITS SVDPGEGYKE WKSPKVDSVS RRPLTPDVTQ RLDDGTCSDE SCGEMDPTEW  1020
TDEEKSIFIQ AVSLYGRDFA MISQCVRSRS RDQCKVFFSK ARKCLGLDVI HPGPGNERTF  1080
TGDDANGSGS GSENACAREM GSGICSDKSG SKMDEDLPLS AMKMNLDESD PAENLISQTA  1140
LSREEEKDER EVLEHKRNVE ASESQVSDAC PTRGIPNLVS DGDSNVMKGV DEPKALPIRE  1200
SNSVLVSIET GRQNGDEQGF SVAELVSVCV GNDEPLNTDS VVGIKPVDEI SSDGLGNQME  1260
GLEEKCNAST SQQSGLEFVV HDSNSTGNTF HLVPDRSSCS GFSLNPDYQH QVSLELNSKD  1320
KSCVISLSQE TSLASANSMS LDSGAIQLEK NGNEDKMSTT LDFQESKDVC HISVCRDESY  1380
EHLTGLPLLT NAQSSQVLRA YPLQMPIKKE VNGDIRCRNV SEVQSLPKSD RSSNNHLFSQ  1440
DCYLQRCNNL KSESSMPEFP LMSPKIEQAI DHSKSRSQSL SDSENSGRSG GDVKLFGKIL  1500
SNPSSLNNSN SGYRENEEKE GSHEHKSSNK SSNLKFGNLH NSDENSALLK FDRNNYMSIE  1560
NVQMRNYAYW DGTRLQATFP TVPDSAILLA KYPAAFGNFP TSTTKMEQQT LQAVVKGNEL  1620
HVNGASVFPT REISNSNGMV DHPVFRSREA AKVQPFTVDV KQRADMFSEA QRRNGIEAIA  1680
SFQHQGRGMV GINVLGRGGI VVGGPCTTGV SDPVAALKMH FAKTEQQFGG QTSGIIREDE  1740
SWRGNGDIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein