PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON62807.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 306aa    MW: 34321.3 Da    PI: 9.8202
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON62807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-072570346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+ E +l+ +a + + ++   +W+ +a+ ++ g+t ++++ ++  
       PON62807.1 25 NWTAAENKLFENALAVYDKEtpdRWHNVAAVIP-GKTVEDVIKKYKE 70
                     8*****************99*************.*********9975 PP
2Myb_DNA-binding48.22.5e-15132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
       PON62807.1 132 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 176
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEILSSPASY ISNSNWLLQD SKGTNWTAAE NKLFENALAV YDKETPDRWH NVAAVIPGKT  60
VEDVIKKYKE LEFDVSNIEA GLIPIPGYTT STFTLDWVNG RGYDGFKQSY GLGGKRASST  120
RPADQERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VVTRTPTQVA SHAQKYFIRQ  180
LSGGKDKRRA SIHDITTVNL NDTRTPSPDE RRLPSPEDST VVPQKLNSTA VSRNPFQWNQ  240
PSSGGANMGF HMTNGNSMFI NNPYGINTYG LKVQGHNLPR GAIHDSYFGS QSMAFQMQST  300
QHYPHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-108MYB_related family protein