PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON62588.1
Organism
Parasponia andersonii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
Family LBD
Protein Properties Length: 224aa    MW: 24533.6 Da    PI: 7.9472
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON62588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.52.3e-38131141101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkCa dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k
  PON62588.1  13 PCGACKFLRRKCAVDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVFTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQAK 111
                 7*************************99*******************************************************************9999 PP

      DUF260  99 eel 101
                 ++l
  PON62588.1 112 AQL 114
                 875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MASAAGTGST GSPCGACKFL RRKCAVDCIF APYFCSEQGP ARFAAIHKVF GASNVSKLLL  60
HVPVPDRCEA VFTIAYEAQA RIRDPVYGCV AHIFALQQQV ACLQAQLMQA KAQLAQNFID  120
HSRSVENNNQ WVGFNNVNNG SSGANLSNFY VNNNYMNYPI SPQSSLDSVD QNGSDLIMNA  180
QHHQEIQSGR PNSEDYLVQA CSRKRPNNGD LGELQALALR MMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-58LBD family protein