PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON62508.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

Trihelix

Protein Properties

Length: 406aa MW: 45009.4 Da PI: 9.2789

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON62508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49	1.6e-15	23	114	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e++ Liea++ ++er ++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++ ++ PON62508.1 23 WTVSETMILIEAKKMDDERRTKRItgndneqgrsisgttttstkPAELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVRDYERRVAE 114 ***********9666665543122345566666667777766999**************************************98643 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MADQGGNTSS NTTLMRDYRK GNWTVSETMI LIEAKKMDDE RRTKRITGND NEQGRSISGT 60 TTTSTKPAEL RWKWVEDYCW RKGCLRSQNQ CNDKWDNLMR DYKKVRDYER RVAEKSGAGG 120 EGVSTHEDQS YWKIEKNERK EKNLPTNMLP QIYEALVDVV ERKSQRLLGG ISGVSSVPSS 180 SPSTGYQMVE RPMSGVGVIH HPHRHIQQQP PLMASQPLLL PHHISASPII ALPLPLTSAP 240 VTVDAAEVAV APPPVQSQPP SHALPYSQPI LPTVDSDTSE HPNSPAKRRK KASDHQQQQQ 300 HHQGPGTAPT TSASGRSSSS SSDQVVATAI SKSASIIAEA LQACEEREER RHRDLLSLHE 360 KRLKIEESKT EVNRQGINGL VDAINRLANS IQALASDRHQ LTSKPS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MADQGGNTSS NTTLMRDYRK GNWTVSETMI LIEAKKMDDE RRTKRITGND NEQGRSISGT  60
TTTSTKPAEL RWKWVEDYCW RKGCLRSQNQ CNDKWDNLMR DYKKVRDYER RVAEKSGAGG  120
EGVSTHEDQS YWKIEKNERK EKNLPTNMLP QIYEALVDVV ERKSQRLLGG ISGVSSVPSS  180
SPSTGYQMVE RPMSGVGVIH HPHRHIQQQP PLMASQPLLL PHHISASPII ALPLPLTSAP  240
VTVDAAEVAV APPPVQSQPP SHALPYSQPI LPTVDSDTSE HPNSPAKRRK KASDHQQQQQ  300
HHQGPGTAPT TSASGRSSSS SSDQVVATAI SKSASIIAEA LQACEEREER RHRDLLSLHE  360
KRLKIEESKT EVNRQGINGL VDAINRLANS IQALASDRHQ LTSKPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	3e-59	Trihelix family protein