PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON62233.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 517aa MW: 56958.6 Da PI: 6.938

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON62233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +lv++v+++G g+W+++ + g+ R++k+c++rw ++l PON62233.1 35 KGPWTTSEDAILVEYVRKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 82 79******************************************9986 PP
2	Myb_DNA-binding	51	3.4e-16	88	131	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++ +lG++ W++ a+ ++ gRt++++k++w++ PON62233.1 88 KGSFTPEEERIIIELHSKLGNK-WARMASQLP-GRTDNEIKNYWNT 131 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MMMNNEEADE RAAAVAATKS AEEAGGFRGG GSLKKGPWTT SEDAILVEYV RKHGEGNWNA 60 VQKNSGLARC GKSCRLRWAN HLRPNLKKGS FTPEEERIII ELHSKLGNKW ARMASQLPGR 120 TDNEIKNYWN TRMKRRQRAG LPLYPHDIPV QYQNDNNQRH SSSSSSSFSS QLLSPSHHHH 180 HHHNHPPKLP NNNYTFHHHH SVFHSQPSDN SAHLFTANNS GLALPICSSG FPFGPSPSSS 240 SALFNQRTHV PIPQTTLPNP SFRYNVPAGF SGSFGNLSSM VSAPYDPSAV EFHQVPSSVS 300 VNMVTELPST QTTPLQSTTP ASSYTSGGEG RGGGDEFEFQ ESRGNNSGLL DALLFESQAL 360 SRNEKAKRKG SPVPAPPEKG KRFFPENQSA EEEEEEEEEH TIGSESVLKN KCNENYGRTE 420 NFSTSCQSSI GIEQSEEPLD DNLMSLLNNF PTSMPVPDWY GGRGGNSKRE NLGVTSGYAR 480 RVEDVVAQDS SLVPPTTTGK HERSLDSCYW NNMPGIC

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MMMNNEEADE RAAAVAATKS AEEAGGFRGG GSLKKGPWTT SEDAILVEYV RKHGEGNWNA  60
VQKNSGLARC GKSCRLRWAN HLRPNLKKGS FTPEEERIII ELHSKLGNKW ARMASQLPGR  120
TDNEIKNYWN TRMKRRQRAG LPLYPHDIPV QYQNDNNQRH SSSSSSSFSS QLLSPSHHHH  180
HHHNHPPKLP NNNYTFHHHH SVFHSQPSDN SAHLFTANNS GLALPICSSG FPFGPSPSSS  240
SALFNQRTHV PIPQTTLPNP SFRYNVPAGF SGSFGNLSSM VSAPYDPSAV EFHQVPSSVS  300
VNMVTELPST QTTPLQSTTP ASSYTSGGEG RGGGDEFEFQ ESRGNNSGLL DALLFESQAL  360
SRNEKAKRKG SPVPAPPEKG KRFFPENQSA EEEEEEEEEH TIGSESVLKN KCNENYGRTE  420
NFSTSCQSSI GIEQSEEPLD DNLMSLLNNF PTSMPVPDWY GGRGGNSKRE NLGVTSGYAR  480
RVEDVVAQDS SLVPPTTTGK HERSLDSCYW NNMPGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	2e-72	MYB family protein