PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON62004.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

MYB

Protein Properties

Length: 379aa MW: 42695.9 Da PI: 5.529

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON62004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWTteEde+l ++++ +G g+W++ ++ g+ R++k+c++rw +yl PON62004.1 14 KGRWTTEEDEILTKYIQAHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.9	4.8e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e +v++++ lG++ W++Ia++++ gRt++++k++w+++l PON62004.1 67 RGNITAEEEETIVKLHNALGNR-WSLIAEHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGRAPCCEKL GLKKGRWTTE EDEILTKYIQ AHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI TAEEEETIVK LHNALGNRWS LIAEHLPGRT DNEIKNYWNS HLSRKIYTFS 120 KQLAMESSSP TIINNMAKLA SVGNRRGGRS RTSRSSAKKN KNANQNPAAK TSPEKPEMDV 180 TTADHDVQVV LLESSSSSAS VKPRSNSATL VPCPIQGVEK SQSLGAKQEE EGSQRRETEE 240 LLGPNEWLDR EVMRLSYVLE DGVLDRPSGN ENMALEEQRE NEKTTSVLNA EARESGSTAE 300 LSGEWHTCNS SAINNNSGFH DDGTWLNWNW IEHVESHNNN YNSTNNDNNE IWDEYLSDQE 360 GEREFSLWET GNFEGRGLN

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGRAPCCEKL GLKKGRWTTE EDEILTKYIQ AHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TAEEEETIVK LHNALGNRWS LIAEHLPGRT DNEIKNYWNS HLSRKIYTFS  120
KQLAMESSSP TIINNMAKLA SVGNRRGGRS RTSRSSAKKN KNANQNPAAK TSPEKPEMDV  180
TTADHDVQVV LLESSSSSAS VKPRSNSATL VPCPIQGVEK SQSLGAKQEE EGSQRRETEE  240
LLGPNEWLDR EVMRLSYVLE DGVLDRPSGN ENMALEEQRE NEKTTSVLNA EARESGSTAE  300
LSGEWHTCNS SAINNNSGFH DDGTWLNWNW IEHVESHNNN YNSTNNDNNE IWDEYLSDQE  360
GEREFSLWET GNFEGRGLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	7e-74	MYB family protein