PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON60992.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family GRAS
Protein Properties Length: 750aa    MW: 84527.5 Da    PI: 5.9077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON60992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.32.1e-1193767471374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+ ++++d + a+++L+++++++sp+gd mqR+a+yf+ +L+ar+a+s++++ykal +++ts    +++l+a++lf  ++P+ k+s++  N
  PON60992.1 376 LRTLLTLCAQSIAADDRRSAEEFLKQIRQHSSPTGDGMQRMAHYFADGLEARMAGSGTQIYKALITKPTS---AAHVLKAYHLFLAACPFKKLSNFFSN 471
                 5789****************************************************************99...999*********************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I++ +e+++r+HiiDf+i +G+QWp+L+q L+sRp+gpp+lRiTgv+ p++g   +e++eetg+rLa++Ae+++v+fef++ +a++++++++e+L++
  PON60992.1 472 KTIMNLAEKATRLHIIDFGILYGFQWPCLIQRLSSRPGGPPNLRITGVDFPQPGfrPAERVEETGRRLANYAETFKVSFEFKA-IAQKWDTIRIEDLKL 569
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E+l+Vn++++  +llde+v +es+r+ vL+l+++++P+v+++   +  ++++ F +rf eal+++s+lfd+le+++ re  er+ +Ere++gre++
  PON60992.1 570 DRDEVLVVNCMHRFRNLLDETVLVESPRNIVLNLIRKMNPDVFILGTVNGAYTAPFFITRFREALYHFSTLFDMLETNVLREIPERMLIEREIFGREAM 668
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+aceg+er+er et+++W+ r+ +aGF+++pl++++ + ak  ++ ++ + + ++++ ++l+ gWk+r  +++S+W+
  PON60992.1 669 NVIACEGSERIERPETYKQWQVRILRAGFRQLPLNQEIIQRAKERVKSYYHKDFVIDKDGQWLLKGWKGRIAFALSSWT 747
                 **************************************************888*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    
MVMDQSLSGF YGSNNNGLDL SGDCISDFSN ENNGSNGFGT NVKVVDQNYS TVLLLPPDPT  60
PSNFAPSSCV NQEDYAHEDF DFSDVVLKYI NQMLMEEDME EKTCMFQESA ALQAAEQSFY  120
KLIGEKYRSA IESPTPCTDL NHESPDGSDA LQDSSSCSYS TSIASSTNLV DPGWHSDPGE  180
YKSWQVVSRC TSQSSFTSSN GTSGIVDAFA DSPLSTLKVP EMFNEMDSVM QFKRGFEEAS  240
KFLPNGNSLS VDLESKSLYS KEFKESKDVV VEEEKKYRTE YLLDGSRVKK NPLSDDDTME  300
GGRSNKQPAV CSESKVSSEM FDMILLNCGK NDSATLREAM QNGTSKNLQQ NGQSKGMNGG  360
KARGKKQGRK RDVVDLRTLL TLCAQSIAAD DRRSAEEFLK QIRQHSSPTG DGMQRMAHYF  420
ADGLEARMAG SGTQIYKALI TKPTSAAHVL KAYHLFLAAC PFKKLSNFFS NKTIMNLAEK  480
ATRLHIIDFG ILYGFQWPCL IQRLSSRPGG PPNLRITGVD FPQPGFRPAE RVEETGRRLA  540
NYAETFKVSF EFKAIAQKWD TIRIEDLKLD RDEVLVVNCM HRFRNLLDET VLVESPRNIV  600
LNLIRKMNPD VFILGTVNGA YTAPFFITRF REALYHFSTL FDMLETNVLR EIPERMLIER  660
EIFGREAMNV IACEGSERIE RPETYKQWQV RILRAGFRQL PLNQEIIQRA KERVKSYYHK  720
DFVIDKDGQW LLKGWKGRIA FALSSWTPAC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein