PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON60648.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 754aa MW: 82098.6 Da PI: 7.114

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON60648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.8	2.5e-24	165	265	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el+ PON60648.1 165 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGELR 260 99**************************963.3445679*********************************************..4499999 PP EEEE- CS B3 94 vkvfr 98 +++++ PON60648.1 261 LGIRK 265 *9997 PP
2	Auxin_resp	122.3	3.5e-40	291	372	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+st+s+F+ +YnPras+s F+++++k++k+l++++svGmRfkm+feted+serr++G+v+gvsd+dp+rWp+SkWr+L PON60648.1 291 VVNAISTRSAFNLYYNPRASSSAFIIPLRKFLKSLDHSFSVGMRFKMRFETEDASERRYTGLVTGVSDMDPIRWPGSKWRCL 372 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MAGPGLIDLN TTEDDETPSS ASSASTSSPS ASASASALTT WGASSSSTSS PSSSSSVCLE 60 LWHACAGPLI SLPKKGSVVV YLPQGHLEQL SDFPTALCDL PPHLFCRVAH VNLHAEEGTD 120 EVYAQVSLVP ESEQFEQKLR EGKIDADGEE EDTEAAVKST TPHMFCKTLT ASDTSTHGGF 180 SVPRRAAEDC FPPLDYNQQR PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK 240 KKLVSGDAVL FLRGEDGELR LGIRKAAQIK GCATFPTLFS QQLNYSSMKD VVNAISTRSA 300 FNLYYNPRAS SSAFIIPLRK FLKSLDHSFS VGMRFKMRFE TEDASERRYT GLVTGVSDMD 360 PIRWPGSKWR CLVVRWDDID SNRHGRVSPW EIEPSGSVPS SASIMAPGLK RTRIGLSSGK 420 AEFPVPNGIG ASDFGESLRF QKVLQGQEIL GFDTPFDGIG TQCPHPSETR RGFPGSNSSG 480 IAAMGNSVRN LHVNSDNITS GRIGFGESFR FHKVLQGQEI HPSSPRGRAP NANEDSEYGG 540 LGIFDRGRVP SSGNGWSTII QSNMAHCRTP AQSLQVSSPS SVLMFQQAVN PVSTFSSMQN 600 SHTLEEQRVT KRSSYASESN GGKLMPFSFS DRDISDEDHG GTKSMYLSSD RNQHGISSPL 660 TTHPEFRSSQ DVVSSCKSSC RLFGFSLTEE KHLPSNEINS TPVSSSLNPG VSLFPNVGGQ 720 FHTKPPLMTK AVGSNCTREM AFDWPGERLG YLKG

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MAGPGLIDLN TTEDDETPSS ASSASTSSPS ASASASALTT WGASSSSTSS PSSSSSVCLE  60
LWHACAGPLI SLPKKGSVVV YLPQGHLEQL SDFPTALCDL PPHLFCRVAH VNLHAEEGTD  120
EVYAQVSLVP ESEQFEQKLR EGKIDADGEE EDTEAAVKST TPHMFCKTLT ASDTSTHGGF  180
SVPRRAAEDC FPPLDYNQQR PSQELVAKDL HGLEWRFRHI YRGQPRRHLL TTGWSAFVNK  240
KKLVSGDAVL FLRGEDGELR LGIRKAAQIK GCATFPTLFS QQLNYSSMKD VVNAISTRSA  300
FNLYYNPRAS SSAFIIPLRK FLKSLDHSFS VGMRFKMRFE TEDASERRYT GLVTGVSDMD  360
PIRWPGSKWR CLVVRWDDID SNRHGRVSPW EIEPSGSVPS SASIMAPGLK RTRIGLSSGK  420
AEFPVPNGIG ASDFGESLRF QKVLQGQEIL GFDTPFDGIG TQCPHPSETR RGFPGSNSSG  480
IAAMGNSVRN LHVNSDNITS GRIGFGESFR FHKVLQGQEI HPSSPRGRAP NANEDSEYGG  540
LGIFDRGRVP SSGNGWSTII QSNMAHCRTP AQSLQVSSPS SVLMFQQAVN PVSTFSSMQN  600
SHTLEEQRVT KRSSYASESN GGKLMPFSFS DRDISDEDHG GTKSMYLSSD RNQHGISSPL  660
TTHPEFRSSQ DVVSSCKSSC RLFGFSLTEE KHLPSNEINS TPVSSSLNPG VSLFPNVGGQ  720
FHTKPPLMTK AVGSNCTREM AFDWPGERLG YLKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein