PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON59897.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C2H2

Protein Properties

Length: 555aa MW: 60850.5 Da PI: 8.3734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON59897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PON59897.1 100 FVCEICNKGFQRDQNLQLHRRGH 122 89*******************88 PP
2	zf-C2H2	12	0.00066	177	199	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PON59897.1 177 WKCDKCSKKYAVQSDWKAHSKTC 199 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MSIITGSGGD GGSLSSGNFG REEVVGGGGV EKQELLENFH NGSNSLSSTT TSNGSTTQPL 60 VLDQHQPPLV KKKRNPPGNP DPTAEVIALS PNTLLAKNRF VCEICNKGFQ RDQNLQLHRR 120 GHNLPWKLRQ RSPNEVIRKR VYICPDPSCV HHNPTRALGD LTGIKKHFCR KHGEKKWKCD 180 KCSKKYAVQS DWKAHSKTCG TREYKCECGT IFSRRDSFIT HRAFCDAIAE ENNRTASLQR 240 QISSNQISSQ QPELISSILS SINDENDNTP TETTSDQFKH ISEHMMIKNN PLTLDHHSMN 300 NNNMAAGGLF SSRSNGLNNM IINNTSTTNI SSSAPLSFDQ QNGQHFGGGG GVFYLSATAL 360 LQKAAQMGTT TASSVSSAMA PSSFATLDQF VKKDHVQEYQ MSSSTTPTST PPPLLPPQFF 420 DVNGNSNSDY GNNKNVGIFS SLLFDHHNQN HAAGSATTFL KDMEQSMNNN DNTSNVVLYG 480 GNSSSVTGGD VLTLDFLGIE RSASRQGNFH HEQKKQVIVN NNLRFGGING HPNMQSTLTQ 540 FQQHAGLMEK HVWEV

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MSIITGSGGD GGSLSSGNFG REEVVGGGGV EKQELLENFH NGSNSLSSTT TSNGSTTQPL  60
VLDQHQPPLV KKKRNPPGNP DPTAEVIALS PNTLLAKNRF VCEICNKGFQ RDQNLQLHRR  120
GHNLPWKLRQ RSPNEVIRKR VYICPDPSCV HHNPTRALGD LTGIKKHFCR KHGEKKWKCD  180
KCSKKYAVQS DWKAHSKTCG TREYKCECGT IFSRRDSFIT HRAFCDAIAE ENNRTASLQR  240
QISSNQISSQ QPELISSILS SINDENDNTP TETTSDQFKH ISEHMMIKNN PLTLDHHSMN  300
NNNMAAGGLF SSRSNGLNNM IINNTSTTNI SSSAPLSFDQ QNGQHFGGGG GVFYLSATAL  360
LQKAAQMGTT TASSVSSAMA PSSFATLDQF VKKDHVQEYQ MSSSTTPTST PPPLLPPQFF  420
DVNGNSNSDY GNNKNVGIFS SLLFDHHNQN HAAGSATTFL KDMEQSMNNN DNTSNVVLYG  480
GNSSSVTGGD VLTLDFLGIE RSASRQGNFH HEQKKQVIVN NNLRFGGING HPNMQSTLTQ  540
FQQHAGLMEK HVWEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	3e-98	C2H2 family protein