PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON58581.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

CO-like

Protein Properties

Length: 383aa MW: 41173.9 Da PI: 5.422

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON58581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.3	2.1e-05	17	58	4	38
zf-B_box 4 rkCpeHeeke.lqlfCedCqqllCedClleeHkg......Ht 38 + C+ +++ + fC+ ++ +lC +C ++H H+ PON58581.1 17 KPCDSCKSAGsAAVFCRADSAFLCLSCDAKIHCAnklasrHE 58 67***9555******************95545666665 PP
2	zf-B_box	26.3	1.6e-08	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ PON58581.1 60 VWVCEVCEQAPAAVTCKADAAALCVSCDADIHSAnplaqrHDRVPV 105 689*****************************66899999999986 PP
3	CCT	69.6	7.7e-24	306	349	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PON58581.1 306 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 349 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MGLIGNGGDG GWSLAAKPCD SCKSAGSAAV FCRADSAFLC LSCDAKIHCA NKLASRHERV 60 WVCEVCEQAP AAVTCKADAA ALCVSCDADI HSANPLAQRH DRVPVEPFFD PADSIVRSSS 120 LNFFADRGGG ACHHDEDVDV EVEPPSPWVI SNPNFASKIM AEAVAAGPDV KSDHLFFSEM 180 DSFLDFDYPN PIHPSSGTDS VVPVKIKPNN PPSPVINSSE NCFDIDFCRS KLSSFNYGAQ 240 CLSHSVSSSS LDVGVVPDGN SMSEISYSFG RSAMNQTSNS SDPLPSVSAS TNSNSAPATQ 300 LCGLDREARV LRYREKRKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTE IETETDLDLD 360 PIYGSAAAAA FIADSQYGVV PTF

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MGLIGNGGDG GWSLAAKPCD SCKSAGSAAV FCRADSAFLC LSCDAKIHCA NKLASRHERV  60
WVCEVCEQAP AAVTCKADAA ALCVSCDADI HSANPLAQRH DRVPVEPFFD PADSIVRSSS  120
LNFFADRGGG ACHHDEDVDV EVEPPSPWVI SNPNFASKIM AEAVAAGPDV KSDHLFFSEM  180
DSFLDFDYPN PIHPSSGTDS VVPVKIKPNN PPSPVINSSE NCFDIDFCRS KLSSFNYGAQ  240
CLSHSVSSSS LDVGVVPDGN SMSEISYSFG RSAMNQTSNS SDPLPSVSAS TNSNSAPATQ  300
LCGLDREARV LRYREKRKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTE IETETDLDLD  360
PIYGSAAAAA FIADSQYGVV PTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-103	CO-like family protein