PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON57837.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 433aa    MW: 47285.5 Da    PI: 7.63
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON57837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-09108129426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+++ + G C+yGd+CkF+H+
  PON57837.1 108 KVCNYWIQ-GNCSYGDKCKFIHS 129
                 68******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MDVDGGGSKR VFQRLTGPGS GDPKHQKVCY HWRAGKCNRF PCPYLHRELQ PPPPNGTASS  60
KRHHAFAASA ATDDHHSGPR RGPNNNNNTW GRVHGNAGGN KFIRKTEKVC NYWIQGNCSY  120
GDKCKFIHSW SLGDSFSLLT QLEGHQNVVS GIALPSGSDK LYTGSQDETV RIWDCQSGQC  180
AAMIKLGSEV GCMISEGPWI FVGILNMVKA WNTQTTMELS LSGPVGQVYS LVVGNELLFA  240
GTQDGSILVW KFNAAANCFE PVTSLKGHSL PVISLVVGAN RLYSGSMDNS IKVWSLETLQ  300
CLQTLTEHNS VVMSVLCWDQ FLLSCSIDQT IKVWVATQNG GLEVTYTHNE EHGVLALCGM  360
HDSEGKPVLL CSCNDNTVRL YDLPSFSERG KIFSKQEVRS IQVGPGGLFF TGDGTGQVRV  420
WKWNTLAEPA STA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein