PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON57733.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

bHLH

Protein Properties

Length: 504aa MW: 53479 Da PI: 8.6775

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON57733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.6	1.4e-15	332	377	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq PON57733.1 332 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 377 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MSQCVPSWDL DDSTGPHPAR LPLRFRSNST APDVPLLDYE VAELTWENGQ IAMHGLGPPR 60 VPNKALTSWA PEKPRAGGTL ESIVNQATRS SLPLPRKPPI FSHTIDGGGA AAAAGDELVP 120 WFDGHGGSAA AVSNNTMTMD AQVPCSNNNN RAASSHHNDR ASARAAAARD SATVPGLGTC 180 GGGGLMRSYT QVASCSGAAT QEENNAGGNG MLVPGKRESR LSGKAAAREW SCRPDPSLSG 240 TASATFGSHQ VRMDSSERET LGLGFASTSM GSPENGSSAK PSTKGTAATA ADDHDSVCHS 300 RPQRESGDED DKKKGNGKSS VSTKRSRAAA IHNQSERKRR DKINQRMKTL QKLVPNSSKT 360 DKASMLDEVI DYLKQLQAQV QMMSRMNMPA MMLPVALQQQ LQMSMMNSMG MGMGMTMDMN 420 TIGRHNLAGI SPILHPTPFM PMTSWDGSGA ADGRLVQPQL AAVVPDPLSS FFACQSQPMT 480 TEAYSRMAAM YQQLHQPPAS SSKS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MSQCVPSWDL DDSTGPHPAR LPLRFRSNST APDVPLLDYE VAELTWENGQ IAMHGLGPPR  60
VPNKALTSWA PEKPRAGGTL ESIVNQATRS SLPLPRKPPI FSHTIDGGGA AAAAGDELVP  120
WFDGHGGSAA AVSNNTMTMD AQVPCSNNNN RAASSHHNDR ASARAAAARD SATVPGLGTC  180
GGGGLMRSYT QVASCSGAAT QEENNAGGNG MLVPGKRESR LSGKAAAREW SCRPDPSLSG  240
TASATFGSHQ VRMDSSERET LGLGFASTSM GSPENGSSAK PSTKGTAATA ADDHDSVCHS  300
RPQRESGDED DKKKGNGKSS VSTKRSRAAA IHNQSERKRR DKINQRMKTL QKLVPNSSKT  360
DKASMLDEVI DYLKQLQAQV QMMSRMNMPA MMLPVALQQQ LQMSMMNSMG MGMGMTMDMN  420
TIGRHNLAGI SPILHPTPFM PMTSWDGSGA ADGRLVQPQL AAVVPDPLSS FFACQSQPMT  480
TEAYSRMAAM YQQLHQPPAS SSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	336	341	ERKRRD
2	337	342	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-95	bHLH family protein