PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON57159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 53274 Da PI: 8.579 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.6 | 7.9e-12 | 53 | 79 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ PON57159.1 53 PGVPNCVYYMRTGYCGYGSRCRYNHPR 79 5789*********************96 PP | |||||||
2 | zf-CCCH | 40 | 6.6e-13 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ PON57159.1 100 EPVCQYYLKTGTCKFGASCKFHHPK 124 789********************96 PP | |||||||
3 | zf-CCCH | 38.7 | 1.6e-12 | 144 | 170 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG+Ck+G +CkF+H++ PON57159.1 144 PGEAECSYYLKTGQCKFGVTCKFHHPQ 170 5789*********************97 PP | |||||||
4 | zf-CCCH | 33.7 | 6.3e-11 | 326 | 352 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++++tG Ck+G++C+++H++ PON57159.1 326 PGEPDCLYYLKTGDCKFGSSCRYHHPR 352 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.5 | 1.6e-11 | 373 | 398 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G+Ck+G++CkF H++ PON57159.1 373 GVQPCTFYLQNGHCKFGASCKFDHPM 398 5689********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence |
MELYGRSPAR NGSNPGHQQE WSPDGGETGL EESMWQLGLT SGGGGGESYP ERPGVPNCVY 60 YMRTGYCGYG SRCRYNHPRD RAAVAAAVRA TGEYPERVGE PVCQYYLKTG TCKFGASCKF 120 HHPKHGGGSL SQAPLNFYGY PLRPGEAECS YYLKTGQCKF GVTCKFHHPQ PAGTSVTASA 180 PQFYPPVQSP SVPMPDQFVG PSTSMRVARP PLLPGSYVQG AYGPVLFPPG IVPMPGWTPY 240 SIFRVDDTIT VSIAIPERYM RFSPDTAPVS PVLSPGTQPT VGAASMYGVT HLPSSTAALV 300 RPYSSLPSSI GASSSSPKEQ AFPERPGEPD CLYYLKTGDC KFGSSCRYHH PRDRVVPRTN 360 CLLSPMGFPL RQGVQPCTFY LQNGHCKFGA SCKFDHPMGT MRYSPSASSL IDMPVTPYPV 420 GSLLATLAPS STSSDLHPEY SSRMPSSGNT STSSVGLIFS QTVPVSLSDV QLSTQSSVPL 480 SSSRSTRQGG EVRRSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 0.0 | C3H family protein |