PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON57041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 28938.7 Da PI: 6.5312 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.1 | 4.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtf+kRrng++KKA+ELSvLCdaev viifsstg+ly++ss PON57041.1 9 KKIENLNSRQVTFCKRRNGLFKKAQELSVLCDAEVGVIIFSSTGRLYDFSS 59 68***********************************************96 PP | |||||||
2 | K-box | 59.7 | 1.2e-20 | 98 | 179 | 19 | 100 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ + + +e+++L+ + +++G++L+ Ls+k+Lq++e++L ++l +i++kK++llleq++++ +e+++ en++Lrk++ee PON57041.1 98 HDENDIMDETQMLRLTCMRMMGKELDGLSFKDLQHMEDKLTEGLLSIKDKKEQLLLEQVKKSTLREQKAMTENENLRKEIEE 179 44567899******999**************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MGRGKIEIKK IENLNSRQVT FCKRRNGLFK KAQELSVLCD AEVGVIIFSS TGRLYDFSST 60 RMEDILSRYN RGPGCLSNNL EPSPDLDATN SEKSPPEHDE NDIMDETQML RLTCMRMMGK 120 ELDGLSFKDL QHMEDKLTEG LLSIKDKKEQ LLLEQVKKST LREQKAMTEN ENLRKEIEEV 180 RRNYITPILS SHPLERRVTT KSTKANTDQA NSVSEESEHS DASLQLRLSS CFGPKRKAAR 240 IESASYDSAS QVASE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 8e-57 | MIKC_MADS family protein |