PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON55950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 575aa MW: 64674.9 Da PI: 5.9875 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 433.6 | 1.5e-132 | 205 | 574 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+ ++++d e ++l+++ ++++s +g+p+qRl ay++e++ ar +s++++y+al+++e + s++ l+++++++e++P+lkf++++aN PON55950.1 205 LKQLLIACAKSLAENDIETFDKLIEKARTIVSISGEPIQRLGAYMVEGMVARKEGSGTNIYRALRCREPE---SKDLLSYMQILYEICPYLKFGYMAAN 300 689******************************************************************9...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p ++ + + l+++++rLa + +++++p+ef + v d++ e+L v PON55950.1 301 GAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPNGPPHVRITGIDDPVNQyaRGDGLQAVERRLATISQNFKIPVEFYA-VPVFAPDVTREMLGV 398 ***************************************************999999**************************.688899********* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +pgEalaVn+ lqlh+++desv+++++rde+L++vkslsPkvv++veqe+++n+++F++rf+eal++y a+f+s++++lpr+s++ri+vE+++l+r+iv PON55950.1 399 RPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMVKSLSPKVVTLVEQESNTNTTPFFHRFVEALDFYLAMFESIDVTLPRNSKHRINVEQHCLARDIV 497 *************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nvvaceg+er+erhe l+kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+SaW PON55950.1 498 NVVACEGRERVERHELLGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLAEKDGAMLLGWKDRNLISASAW 574 **********************************************9999.66************************* PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 575 aa Download sequence |
MDSHELFGIS VTGPSALSYT PSHPTVPSLP SRLLGSLKFE VGNSPSSPFS THFDSENSLT 60 TLSDSQEQYS STENNLSGVS PPPCNSPLET NSYFIYPSGN SLLQDANPSQ NFKHALLELE 120 TALMGPDDDV DDDRLIRPKP SYEEGSSQHS WREERQGQQP SLIQRQTSLV SRQRQSGQVV 180 RNEKRHKSME EDSLYQQGLP PPDNLKQLLI ACAKSLAEND IETFDKLIEK ARTIVSISGE 240 PIQRLGAYMV EGMVARKEGS GTNIYRALRC REPESKDLLS YMQILYEICP YLKFGYMAAN 300 GAIAEACRNE DRIHIIDFQI AQGTQWLTLL QALAARPNGP PHVRITGIDD PVNQYARGDG 360 LQAVERRLAT ISQNFKIPVE FYAVPVFAPD VTREMLGVRP GEALAVNFPL QLHHTPDESV 420 DVNNPRDELL RMVKSLSPKV VTLVEQESNT NTTPFFHRFV EALDFYLAMF ESIDVTLPRN 480 SKHRINVEQH CLARDIVNVV ACEGRERVER HELLGKWKSR LTMAGFRQYP LSSYVNSVIR 540 SLLRCYSEHY TLAEKDGAML LGWKDRNLIS ASAWH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48150.1 | 1e-168 | GRAS family protein |